Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 LSR-205ENST00000427250 1606 ntTSL 2 BASIC22■■□□□ 1.11
LDB3O75112 AC120024.1-201ENST00000562672 995 ntBASIC22■■□□□ 1.11
LDB3O75112 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LDB3O75112 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC22■■□□□ 1.11
LDB3O75112 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LDB3O75112 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
LDB3O75112 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.99■■□□□ 1.11
LDB3O75112 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.99■■□□□ 1.11
LDB3O75112 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.99■■□□□ 1.11
LDB3O75112 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
LDB3O75112 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.99■■□□□ 1.11
LDB3O75112 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
LDB3O75112 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
LDB3O75112 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.98■■□□□ 1.11
LDB3O75112 THA1P-201ENST00000590384 1145 ntBASIC21.98■■□□□ 1.11
LDB3O75112 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.98■■□□□ 1.11
LDB3O75112 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.98■■□□□ 1.11
LDB3O75112 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.98■■□□□ 1.11
LDB3O75112 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
LDB3O75112 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LDB3O75112 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LDB3O75112 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LDB3O75112 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
LDB3O75112 KRT18P24-201ENST00000344739 1156 ntBASIC21.97■■□□□ 1.11
LDB3O75112 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
LDB3O75112 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.97■■□□□ 1.11
LDB3O75112 AP003733.4-201ENST00000623785 1697 ntBASIC21.97■■□□□ 1.11
LDB3O75112 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.97■■□□□ 1.11
LDB3O75112 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.97■■□□□ 1.11
LDB3O75112 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LDB3O75112 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LDB3O75112 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
LDB3O75112 AC011551.1-201ENST00000614101 683 ntBASIC21.96■■□□□ 1.11
LDB3O75112 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
LDB3O75112 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.95■■□□□ 1.1
LDB3O75112 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
LDB3O75112 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.95■■□□□ 1.1
LDB3O75112 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
LDB3O75112 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
LDB3O75112 AL031848.2-201ENST00000607670 837 ntBASIC21.95■■□□□ 1.1
LDB3O75112 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
LDB3O75112 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.95■■□□□ 1.1
LDB3O75112 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
LDB3O75112 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.95■■□□□ 1.1
LDB3O75112 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
LDB3O75112 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
LDB3O75112 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
LDB3O75112 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LDB3O75112 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
LDB3O75112 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
LDB3O75112 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LDB3O75112 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
LDB3O75112 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.94■■□□□ 1.1
LDB3O75112 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LDB3O75112 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.94■■□□□ 1.1
LDB3O75112 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.94■■□□□ 1.1
LDB3O75112 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LDB3O75112 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LDB3O75112 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
LDB3O75112 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
LDB3O75112 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.93■■□□□ 1.1
LDB3O75112 AC135731.1-201ENST00000569415 2548 ntBASIC21.92■■□□□ 1.1
LDB3O75112 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
LDB3O75112 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.92■■□□□ 1.1
LDB3O75112 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.92■■□□□ 1.1
LDB3O75112 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.92■■□□□ 1.1
LDB3O75112 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
LDB3O75112 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
LDB3O75112 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.92■■□□□ 1.1
LDB3O75112 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
LDB3O75112 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LDB3O75112 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
LDB3O75112 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.91■■□□□ 1.1
LDB3O75112 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LDB3O75112 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
LDB3O75112 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
LDB3O75112 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LDB3O75112 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.91■■□□□ 1.1
LDB3O75112 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
LDB3O75112 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LDB3O75112 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.9■■□□□ 1.1
LDB3O75112 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
LDB3O75112 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.9■■□□□ 1.1
LDB3O75112 MIR4281-201ENST00000580852 62 ntBASIC21.9■■□□□ 1.1
LDB3O75112 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
LDB3O75112 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LDB3O75112 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
LDB3O75112 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
LDB3O75112 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.89■■□□□ 1.1
LDB3O75112 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.89■■□□□ 1.1
LDB3O75112 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
LDB3O75112 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.89■■□□□ 1.09
LDB3O75112 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
LDB3O75112 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LDB3O75112 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LDB3O75112 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LDB3O75112 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.88■■□□□ 1.09
LDB3O75112 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.88■■□□□ 1.09
LDB3O75112 AL451085.2-201ENST00000605085 799 ntBASIC21.88■■□□□ 1.09
LDB3O75112 HLA-L-211ENST00000482052 1765 ntBASIC21.88■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms