Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TTC28Q96AY4 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
TTC28Q96AY4 LRRC59-203ENST00000576448 1531 ntBASIC15.59■□□□□ 0.09
TTC28Q96AY4 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
TTC28Q96AY4 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
TTC28Q96AY4 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
TTC28Q96AY4 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC15.59■□□□□ 0.09
TTC28Q96AY4 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
TTC28Q96AY4 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
TTC28Q96AY4 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
TTC28Q96AY4 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC15.58■□□□□ 0.09
TTC28Q96AY4 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC15.58■□□□□ 0.09
TTC28Q96AY4 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
TTC28Q96AY4 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
TTC28Q96AY4 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC15.58■□□□□ 0.09
TTC28Q96AY4 STK16-203ENST00000409516 895 ntTSL 2 BASIC15.58■□□□□ 0.09
TTC28Q96AY4 AL592076.1-201ENST00000424448 303 ntBASIC15.58■□□□□ 0.09
TTC28Q96AY4 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC15.58■□□□□ 0.09
TTC28Q96AY4 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.58■□□□□ 0.09
TTC28Q96AY4 CD276-201ENST00000318424 2738 ntTSL 5 BASIC15.58■□□□□ 0.09
TTC28Q96AY4 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.09
TTC28Q96AY4 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.09
TTC28Q96AY4 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
TTC28Q96AY4 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TTC28Q96AY4 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.58■□□□□ 0.08
TTC28Q96AY4 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.58■□□□□ 0.08
TTC28Q96AY4 STK26-204ENST00000481105 1835 ntTSL 2 BASIC15.58■□□□□ 0.08
TTC28Q96AY4 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TTC28Q96AY4 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TTC28Q96AY4 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TTC28Q96AY4 RBM38-204ENST00000371219 760 ntTSL 2 BASIC15.58■□□□□ 0.08
TTC28Q96AY4 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC15.58■□□□□ 0.08
TTC28Q96AY4 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC15.58■□□□□ 0.08
TTC28Q96AY4 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TTC28Q96AY4 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
TTC28Q96AY4 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TTC28Q96AY4 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
TTC28Q96AY4 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TTC28Q96AY4 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TTC28Q96AY4 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TTC28Q96AY4 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC15.58■□□□□ 0.08
TTC28Q96AY4 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TTC28Q96AY4 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC15.58■□□□□ 0.08
TTC28Q96AY4 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
TTC28Q96AY4 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
TTC28Q96AY4 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TTC28Q96AY4 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.57■□□□□ 0.08
TTC28Q96AY4 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TTC28Q96AY4 AC136759.1-202ENST00000530858 2194 ntBASIC15.57■□□□□ 0.08
TTC28Q96AY4 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC15.57■□□□□ 0.08
TTC28Q96AY4 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TTC28Q96AY4 B9D1-203ENST00000395615 805 ntTSL 3 BASIC15.57■□□□□ 0.08
TTC28Q96AY4 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC15.57■□□□□ 0.08
TTC28Q96AY4 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC15.57■□□□□ 0.08
TTC28Q96AY4 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC15.57■□□□□ 0.08
TTC28Q96AY4 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
TTC28Q96AY4 MIR6769A-201ENST00000617340 73 ntBASIC15.57■□□□□ 0.08
TTC28Q96AY4 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
TTC28Q96AY4 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC15.57■□□□□ 0.08
TTC28Q96AY4 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
TTC28Q96AY4 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
TTC28Q96AY4 ABALON-201ENST00000629058 1903 ntBASIC15.57■□□□□ 0.08
TTC28Q96AY4 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
TTC28Q96AY4 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC15.57■□□□□ 0.08
TTC28Q96AY4 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.57■□□□□ 0.08
TTC28Q96AY4 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
TTC28Q96AY4 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC15.57■□□□□ 0.08
TTC28Q96AY4 MIR566-201ENST00000385187 94 ntBASIC15.57■□□□□ 0.08
TTC28Q96AY4 AL583805.1-201ENST00000391389 531 ntBASIC15.57■□□□□ 0.08
TTC28Q96AY4 CFL1P6-201ENST00000400899 494 ntBASIC15.57■□□□□ 0.08
TTC28Q96AY4 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TTC28Q96AY4 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC15.57■□□□□ 0.08
TTC28Q96AY4 AC008723.1-201ENST00000506922 207 ntBASIC15.57■□□□□ 0.08
TTC28Q96AY4 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC15.57■□□□□ 0.08
TTC28Q96AY4 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC15.57■□□□□ 0.08
TTC28Q96AY4 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC15.57■□□□□ 0.08
TTC28Q96AY4 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC15.57■□□□□ 0.08
TTC28Q96AY4 MIR3180-2-201ENST00000581748 88 ntBASIC15.57■□□□□ 0.08
TTC28Q96AY4 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
TTC28Q96AY4 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
TTC28Q96AY4 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC15.57■□□□□ 0.08
TTC28Q96AY4 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TTC28Q96AY4 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TTC28Q96AY4 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC15.56■□□□□ 0.08
TTC28Q96AY4 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
TTC28Q96AY4 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TTC28Q96AY4 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TTC28Q96AY4 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC15.56■□□□□ 0.08
TTC28Q96AY4 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TTC28Q96AY4 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TTC28Q96AY4 WASH7P-201ENST00000488147 1351 ntBASIC15.56■□□□□ 0.08
TTC28Q96AY4 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC15.56■□□□□ 0.08
TTC28Q96AY4 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TTC28Q96AY4 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TTC28Q96AY4 BX088651.3-201ENST00000418155 352 ntBASIC15.56■□□□□ 0.08
TTC28Q96AY4 AL929302.1-201ENST00000426556 871 ntBASIC15.56■□□□□ 0.08
TTC28Q96AY4 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC15.56■□□□□ 0.08
TTC28Q96AY4 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TTC28Q96AY4 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC15.56■□□□□ 0.08
TTC28Q96AY4 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms