Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 AC126365.1-201ENST00000578585 1514 ntBASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 POLD2P1-201ENST00000511220 997 ntBASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 PGAM5P1-201ENST00000518923 814 ntBASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 AC040169.1-201ENST00000565382 521 ntBASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 AC067930.6-201ENST00000623257 4947 ntBASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC16.37■□□□□ 0.21
ATG4AQ8WYN0 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 MARS-233ENST00000628866 2583 ntTSL 5 BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 AZGP1P1-201ENST00000411909 902 ntBASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 AL592309.1-201ENST00000443127 649 ntBASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 KRT8P23-201ENST00000560090 1207 ntBASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 STRN-202ENST00000379213 2254 ntTSL 5 BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
ATG4AQ8WYN0 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 AL607033.1-201ENST00000623900 1599 ntBASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 RARRES2P9-201ENST00000565168 469 ntBASIC16.35■□□□□ 0.21
ATG4AQ8WYN0 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms