Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 AL662799.1-202ENST00000614205 422 ntBASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 BTBD7P1-201ENST00000447253 1453 ntBASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 AC091951.1-201ENST00000512854 2465 ntBASIC16.02■□□□□ 0.16
SHROOM3Q8TF72 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 GPR53P-205ENST00000457298 1084 ntBASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 WASH4P-201ENST00000564273 1246 ntBASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.02■□□□□ 0.15
SHROOM3Q8TF72 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 RASL12-203ENST00000434605 982 ntTSL 2 BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 U91328.1-201ENST00000437528 223 ntBASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 AC074044.1-201ENST00000609673 707 ntBASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 AC084364.1-201ENST00000551967 1556 ntBASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.01■□□□□ 0.15
SHROOM3Q8TF72 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHROOM3Q8TF72 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHROOM3Q8TF72 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHROOM3Q8TF72 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 AC114501.2-201ENST00000439631 535 ntBASIC16■□□□□ 0.15
SHROOM3Q8TF72 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 TMPRSS11CP-201ENST00000453277 683 ntBASIC16■□□□□ 0.15
SHROOM3Q8TF72 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 AL158212.4-201ENST00000624062 1286 ntBASIC16■□□□□ 0.15
SHROOM3Q8TF72 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16■□□□□ 0.15
SHROOM3Q8TF72 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16■□□□□ 0.15
SHROOM3Q8TF72 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
SHROOM3Q8TF72 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16■□□□□ 0.15
SHROOM3Q8TF72 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16■□□□□ 0.15
SHROOM3Q8TF72 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms