Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SKA3Q8IX90 AC051619.7-201ENST00000568314 623 ntBASIC14.02□□□□□ -0.17
SKA3Q8IX90 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC14.02□□□□□ -0.17
SKA3Q8IX90 GPER1-207ENST00000619052 571 ntTSL 2 BASIC14.02□□□□□ -0.17
SKA3Q8IX90 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SKA3Q8IX90 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.02□□□□□ -0.17
SKA3Q8IX90 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SKA3Q8IX90 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
SKA3Q8IX90 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.02□□□□□ -0.17
SKA3Q8IX90 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SKA3Q8IX90 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SKA3Q8IX90 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
SKA3Q8IX90 CETN4P-206ENST00000642099 2168 ntBASIC14.02□□□□□ -0.17
SKA3Q8IX90 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
SKA3Q8IX90 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
SKA3Q8IX90 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SKA3Q8IX90 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 BAD-202ENST00000394531 631 ntTSL 3 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 GGCT-205ENST00000409436 954 ntTSL 3 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 HLA-DRB6-201ENST00000411500 1235 ntBASIC14.01□□□□□ -0.17
SKA3Q8IX90 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 BAD-207ENST00000544785 525 ntTSL 3 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 VILL-207ENST00000465644 1857 ntTSL 5 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC14.01□□□□□ -0.17
SKA3Q8IX90 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SKA3Q8IX90 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14□□□□□ -0.17
SKA3Q8IX90 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
SKA3Q8IX90 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SKA3Q8IX90 IMPDH1P4-201ENST00000445028 1534 ntBASIC14□□□□□ -0.17
SKA3Q8IX90 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
SKA3Q8IX90 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14□□□□□ -0.17
SKA3Q8IX90 R3HDM2P2-201ENST00000401880 2116 ntBASIC14□□□□□ -0.17
SKA3Q8IX90 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
SKA3Q8IX90 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
SKA3Q8IX90 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC14□□□□□ -0.17
SKA3Q8IX90 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
SKA3Q8IX90 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SKA3Q8IX90 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SKA3Q8IX90 KRT8P12-202ENST00000472924 1397 ntBASIC14□□□□□ -0.17
SKA3Q8IX90 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14□□□□□ -0.17
SKA3Q8IX90 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SKA3Q8IX90 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14□□□□□ -0.17
SKA3Q8IX90 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
SKA3Q8IX90 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14□□□□□ -0.17
SKA3Q8IX90 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
SKA3Q8IX90 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
SKA3Q8IX90 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC14□□□□□ -0.17
SKA3Q8IX90 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC14□□□□□ -0.17
SKA3Q8IX90 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
SKA3Q8IX90 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC14□□□□□ -0.17
SKA3Q8IX90 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC14□□□□□ -0.17
SKA3Q8IX90 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14□□□□□ -0.17
SKA3Q8IX90 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC14□□□□□ -0.17
SKA3Q8IX90 RPL37AP1-201ENST00000412502 279 ntBASIC14□□□□□ -0.17
SKA3Q8IX90 AC107890.1-201ENST00000422478 521 ntBASIC14□□□□□ -0.17
SKA3Q8IX90 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
SKA3Q8IX90 EEF1DP4-201ENST00000446006 880 ntBASIC14□□□□□ -0.17
SKA3Q8IX90 FXR1-221ENST00000491674 365 ntTSL 2 BASIC14□□□□□ -0.17
SKA3Q8IX90 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms