Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.21■□□□□ 0.02
PPP4R4Q6NUP7 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PPP4R4Q6NUP7 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
PPP4R4Q6NUP7 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.21■□□□□ 0.02
PPP4R4Q6NUP7 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PPP4R4Q6NUP7 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 AC131009.4-201ENST00000624048 1740 ntBASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 AC005622.1-201ENST00000636801 1703 ntBASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 AC112693.3-201ENST00000624819 1983 ntBASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 AC091951.1-201ENST00000512854 2465 ntBASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 BANP-203ENST00000393207 2438 ntTSL 2 BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 OR7E47P-204ENST00000575924 449 ntBASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 MIR3687-2-201ENST00000577708 61 ntBASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 AC023141.13-201ENST00000604991 943 ntBASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 MIR3687-1-201ENST00000614492 61 ntBASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 AL513190.1-201ENST00000621254 727 ntBASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
PPP4R4Q6NUP7 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 MIR1233-2-201ENST00000408138 82 ntBASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 MIR1233-1-201ENST00000408722 82 ntBASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 AC091167.2-201ENST00000579581 588 ntBASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PPP4R4Q6NUP7 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms