Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC11.17□□□□□ -0.62
CKS1BP61024 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 KPNA4-201ENST00000334256 8981 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC11.17□□□□□ -0.62
CKS1BP61024 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC11.17□□□□□ -0.62
CKS1BP61024 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 CACNA1C-209ENST00000399603 7377 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
CKS1BP61024 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC11.16□□□□□ -0.62
CKS1BP61024 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 AC068075.1-201ENST00000519714 1832 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC11.16□□□□□ -0.62
CKS1BP61024 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC11.16□□□□□ -0.62
CKS1BP61024 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC11.16□□□□□ -0.62
CKS1BP61024 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
CKS1BP61024 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC11.16□□□□□ -0.62
CKS1BP61024 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC11.16□□□□□ -0.62
CKS1BP61024 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 NSUN5P1-202ENST00000421140 1535 ntBASIC11.16□□□□□ -0.62
CKS1BP61024 NSUN5P2-203ENST00000457352 1529 ntBASIC11.16□□□□□ -0.62
CKS1BP61024 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC11.16□□□□□ -0.62
CKS1BP61024 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC11.16□□□□□ -0.62
CKS1BP61024 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC11.16□□□□□ -0.62
CKS1BP61024 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
CKS1BP61024 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC11.16□□□□□ -0.62
CKS1BP61024 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC11.16□□□□□ -0.62
CKS1BP61024 RCN1P2-201ENST00000398357 915 ntBASIC11.16□□□□□ -0.62
CKS1BP61024 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 POM121L3P-201ENST00000419331 1163 ntBASIC11.16□□□□□ -0.62
CKS1BP61024 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC11.16□□□□□ -0.62
CKS1BP61024 TSSC2-201ENST00000450217 709 ntBASIC11.16□□□□□ -0.62
CKS1BP61024 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC11.16□□□□□ -0.62
CKS1BP61024 AC091607.1-201ENST00000490318 1060 ntBASIC11.16□□□□□ -0.62
CKS1BP61024 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC11.16□□□□□ -0.62
CKS1BP61024 LTBR-211ENST00000543190 785 ntTSL 3 BASIC11.16□□□□□ -0.62
CKS1BP61024 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC11.16□□□□□ -0.62
CKS1BP61024 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC11.16□□□□□ -0.62
CKS1BP61024 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
CKS1BP61024 AC114341.1-201ENST00000618070 349 ntBASIC11.16□□□□□ -0.62
CKS1BP61024 AL590326.2-201ENST00000625139 305 ntBASIC11.16□□□□□ -0.62
CKS1BP61024 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC11.16□□□□□ -0.62
CKS1BP61024 FANCC-210ENST00000490972 2709 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC11.16□□□□□ -0.62
CKS1BP61024 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
CKS1BP61024 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC11.16□□□□□ -0.62
CKS1BP61024 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC11.16□□□□□ -0.62
CKS1BP61024 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC11.16□□□□□ -0.62
CKS1BP61024 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC11.16□□□□□ -0.62
CKS1BP61024 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC11.16□□□□□ -0.62
CKS1BP61024 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 GNPDA1-204ENST00000503794 2622 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC11.16□□□□□ -0.62
CKS1BP61024 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC11.16□□□□□ -0.62
CKS1BP61024 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CKS1BP61024 HARS-203ENST00000431330 1774 ntTSL 2 BASIC11.16□□□□□ -0.62
CKS1BP61024 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC11.16□□□□□ -0.62
CKS1BP61024 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CKS1BP61024 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CKS1BP61024 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
CKS1BP61024 MANBAL-201ENST00000373605 1915 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
CKS1BP61024 KRT42P-202ENST00000438131 2895 ntTSL 2 BASIC11.15□□□□□ -0.62
CKS1BP61024 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC11.15□□□□□ -0.62
CKS1BP61024 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC11.15□□□□□ -0.62
CKS1BP61024 SEC14L5-201ENST00000251170 6459 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CKS1BP61024 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC11.15□□□□□ -0.62
CKS1BP61024 USP40-201ENST00000251722 5692 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
CKS1BP61024 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CKS1BP61024 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CKS1BP61024 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
CKS1BP61024 AC005912.2-201ENST00000619492 2400 ntBASIC11.15□□□□□ -0.62
CKS1BP61024 GGT3P-204ENST00000453783 1664 ntBASIC11.15□□□□□ -0.62
CKS1BP61024 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC11.15□□□□□ -0.62
CKS1BP61024 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CKS1BP61024 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
CKS1BP61024 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
CKS1BP61024 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CKS1BP61024 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CKS1BP61024 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
CKS1BP61024 SP100-205ENST00000409824 1802 ntTSL 5 BASIC11.15□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms