Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA1P55317 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
FOXA1P55317 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.28■□□□□ 0.04
FOXA1P55317 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA1P55317 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC15.28■□□□□ 0.04
FOXA1P55317 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA1P55317 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA1P55317 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.28■□□□□ 0.04
FOXA1P55317 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA1P55317 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA1P55317 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
FOXA1P55317 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA1P55317 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA1P55317 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
FOXA1P55317 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.28■□□□□ 0.04
FOXA1P55317 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.28■□□□□ 0.04
FOXA1P55317 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
FOXA1P55317 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.27■□□□□ 0.04
FOXA1P55317 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA1P55317 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
FOXA1P55317 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA1P55317 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
FOXA1P55317 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA1P55317 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA1P55317 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA1P55317 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
FOXA1P55317 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA1P55317 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
FOXA1P55317 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
FOXA1P55317 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA1P55317 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
FOXA1P55317 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA1P55317 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA1P55317 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA1P55317 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
FOXA1P55317 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.27■□□□□ 0.04
FOXA1P55317 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
FOXA1P55317 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA1P55317 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA1P55317 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA1P55317 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
FOXA1P55317 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA1P55317 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
FOXA1P55317 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA1P55317 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.27■□□□□ 0.04
FOXA1P55317 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC15.27■□□□□ 0.04
FOXA1P55317 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.27■□□□□ 0.04
FOXA1P55317 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.27■□□□□ 0.04
FOXA1P55317 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.27■□□□□ 0.04
FOXA1P55317 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA1P55317 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC15.27■□□□□ 0.04
FOXA1P55317 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
FOXA1P55317 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
FOXA1P55317 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.27■□□□□ 0.03
FOXA1P55317 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.03
FOXA1P55317 AC023908.3-201ENST00000564211 3047 ntBASIC15.27■□□□□ 0.03
FOXA1P55317 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC15.27■□□□□ 0.03
FOXA1P55317 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
FOXA1P55317 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
FOXA1P55317 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.27■□□□□ 0.03
FOXA1P55317 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
FOXA1P55317 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA1P55317 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
FOXA1P55317 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA1P55317 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
FOXA1P55317 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
FOXA1P55317 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA1P55317 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA1P55317 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC15.26■□□□□ 0.03
FOXA1P55317 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA1P55317 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA1P55317 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA1P55317 ELL2P1-201ENST00000413990 1906 ntBASIC15.26■□□□□ 0.03
FOXA1P55317 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
FOXA1P55317 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA1P55317 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA1P55317 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA1P55317 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA1P55317 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA1P55317 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.26■□□□□ 0.03
FOXA1P55317 AL022342.1-201ENST00000400363 863 ntBASIC15.26■□□□□ 0.03
FOXA1P55317 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.26■□□□□ 0.03
FOXA1P55317 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC15.26■□□□□ 0.03
FOXA1P55317 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
FOXA1P55317 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
FOXA1P55317 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.26■□□□□ 0.03
FOXA1P55317 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.26■□□□□ 0.03
FOXA1P55317 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.26■□□□□ 0.03
FOXA1P55317 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC15.26■□□□□ 0.03
FOXA1P55317 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.26■□□□□ 0.03
FOXA1P55317 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC15.26■□□□□ 0.03
FOXA1P55317 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA1P55317 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.26■□□□□ 0.03
FOXA1P55317 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
FOXA1P55317 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA1P55317 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA1P55317 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA1P55317 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC15.26■□□□□ 0.03
FOXA1P55317 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
FOXA1P55317 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms