Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH6P55285 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.43■□□□□ 0.22
CDH6P55285 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CDH6P55285 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.43■□□□□ 0.22
CDH6P55285 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH6P55285 CETN4P-206ENST00000642099 2168 ntBASIC16.43■□□□□ 0.22
CDH6P55285 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CDH6P55285 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16.42■□□□□ 0.22
CDH6P55285 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CDH6P55285 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH6P55285 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDH6P55285 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
CDH6P55285 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH6P55285 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH6P55285 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDH6P55285 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDH6P55285 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDH6P55285 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH6P55285 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
CDH6P55285 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH6P55285 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.42■□□□□ 0.22
CDH6P55285 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.42■□□□□ 0.22
CDH6P55285 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.42■□□□□ 0.22
CDH6P55285 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CDH6P55285 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.42■□□□□ 0.22
CDH6P55285 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.42■□□□□ 0.22
CDH6P55285 Z92544.3-201ENST00000624747 417 ntBASIC16.42■□□□□ 0.22
CDH6P55285 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH6P55285 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.42■□□□□ 0.22
CDH6P55285 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH6P55285 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.42■□□□□ 0.22
CDH6P55285 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH6P55285 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.42■□□□□ 0.22
CDH6P55285 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CDH6P55285 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
CDH6P55285 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.41■□□□□ 0.22
CDH6P55285 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH6P55285 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH6P55285 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC16.41■□□□□ 0.22
CDH6P55285 AL596257.1-201ENST00000641463 2694 ntBASIC16.41■□□□□ 0.22
CDH6P55285 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 CNN2P2-201ENST00000443536 909 ntBASIC16.41■□□□□ 0.22
CDH6P55285 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 CNN2P3-201ENST00000450201 906 ntBASIC16.41■□□□□ 0.22
CDH6P55285 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.41■□□□□ 0.22
CDH6P55285 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.41■□□□□ 0.22
CDH6P55285 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH6P55285 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.41■□□□□ 0.22
CDH6P55285 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH6P55285 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
CDH6P55285 AL136317.3-201ENST00000618497 906 ntBASIC16.41■□□□□ 0.22
CDH6P55285 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.41■□□□□ 0.22
CDH6P55285 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
CDH6P55285 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
CDH6P55285 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH6P55285 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH6P55285 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.41■□□□□ 0.22
CDH6P55285 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.41■□□□□ 0.22
CDH6P55285 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH6P55285 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CDH6P55285 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
CDH6P55285 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
CDH6P55285 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH6P55285 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.4■□□□□ 0.22
CDH6P55285 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
CDH6P55285 AC138035.3-201ENST00000622706 2791 ntBASIC16.4■□□□□ 0.22
CDH6P55285 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH6P55285 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH6P55285 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.4■□□□□ 0.22
CDH6P55285 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms