Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
SOX2P48431 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC13.96□□□□□ -0.18
SOX2P48431 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC13.95□□□□□ -0.18
SOX2P48431 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC13.95□□□□□ -0.18
SOX2P48431 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC13.95□□□□□ -0.18
SOX2P48431 CICP23-201ENST00000605013 2741 ntBASIC13.95□□□□□ -0.18
SOX2P48431 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
SOX2P48431 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
SOX2P48431 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 COCH-203ENST00000460581 2688 ntTSL 2 BASIC13.95□□□□□ -0.18
SOX2P48431 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC13.95□□□□□ -0.18
SOX2P48431 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
SOX2P48431 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC13.95□□□□□ -0.18
SOX2P48431 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC13.95□□□□□ -0.18
SOX2P48431 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC13.95□□□□□ -0.18
SOX2P48431 AC009947.1-201ENST00000444350 727 ntBASIC13.95□□□□□ -0.18
SOX2P48431 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC13.95□□□□□ -0.18
SOX2P48431 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC13.95□□□□□ -0.18
SOX2P48431 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC13.95□□□□□ -0.18
SOX2P48431 AC096734.2-201ENST00000562054 433 ntBASIC13.95□□□□□ -0.18
SOX2P48431 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC13.95□□□□□ -0.18
SOX2P48431 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC13.95□□□□□ -0.18
SOX2P48431 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC13.95□□□□□ -0.18
SOX2P48431 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 AC023141.13-201ENST00000604991 943 ntBASIC13.95□□□□□ -0.18
SOX2P48431 MIR7706-201ENST00000613747 67 ntBASIC13.95□□□□□ -0.18
SOX2P48431 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
SOX2P48431 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC13.95□□□□□ -0.18
SOX2P48431 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
SOX2P48431 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 AC023908.3-201ENST00000564211 3047 ntBASIC13.95□□□□□ -0.18
SOX2P48431 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC13.95□□□□□ -0.18
SOX2P48431 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC13.95□□□□□ -0.18
SOX2P48431 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC13.95□□□□□ -0.18
SOX2P48431 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX2P48431 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX2P48431 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SOX2P48431 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
SOX2P48431 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
SOX2P48431 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX2P48431 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
SOX2P48431 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC13.94□□□□□ -0.18
SOX2P48431 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SOX2P48431 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC13.94□□□□□ -0.18
SOX2P48431 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX2P48431 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX2P48431 AGAP7P-201ENST00000582299 2062 ntBASIC13.94□□□□□ -0.18
SOX2P48431 AGAP14-201ENST00000624701 2060 ntBASIC13.94□□□□□ -0.18
SOX2P48431 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC13.94□□□□□ -0.18
SOX2P48431 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX2P48431 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SOX2P48431 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX2P48431 WASH6P-202ENST00000359512 1437 ntBASIC13.94□□□□□ -0.18
SOX2P48431 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC13.94□□□□□ -0.18
SOX2P48431 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX2P48431 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
SOX2P48431 CSF3-203ENST00000394148 622 ntTSL 3 BASIC13.94□□□□□ -0.18
SOX2P48431 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SOX2P48431 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC13.94□□□□□ -0.18
SOX2P48431 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC13.94□□□□□ -0.18
SOX2P48431 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SOX2P48431 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC13.94□□□□□ -0.18
SOX2P48431 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC13.94□□□□□ -0.18
SOX2P48431 AC079781.3-201ENST00000449110 356 ntBASIC13.94□□□□□ -0.18
SOX2P48431 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.94□□□□□ -0.18
SOX2P48431 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC13.94□□□□□ -0.18
SOX2P48431 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC13.94□□□□□ -0.18
SOX2P48431 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
SOX2P48431 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC13.94□□□□□ -0.18
SOX2P48431 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
SOX2P48431 PRKN-208ENST00000610470 531 ntTSL 2 BASIC13.94□□□□□ -0.18
SOX2P48431 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
SOX2P48431 PRKN-209ENST00000612485 225 ntTSL 5 BASIC13.94□□□□□ -0.18
SOX2P48431 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
SOX2P48431 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC13.94□□□□□ -0.18
SOX2P48431 AC007064.4-201ENST00000637740 555 ntBASIC13.94□□□□□ -0.18
SOX2P48431 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
SOX2P48431 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
SOX2P48431 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms