Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RXRBP28702 AC009113.1-201ENST00000570267 2443 ntBASIC20.12■□□□□ 0.81
RXRBP28702 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RXRBP28702 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RXRBP28702 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RXRBP28702 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RXRBP28702 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RXRBP28702 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RXRBP28702 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
RXRBP28702 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC20.12■□□□□ 0.81
RXRBP28702 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RXRBP28702 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC20.12■□□□□ 0.81
RXRBP28702 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RXRBP28702 AC022616.1-201ENST00000518688 554 ntBASIC20.12■□□□□ 0.81
RXRBP28702 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC20.12■□□□□ 0.81
RXRBP28702 AC027237.1-201ENST00000560942 655 ntBASIC20.12■□□□□ 0.81
RXRBP28702 AC093752.3-201ENST00000567343 901 ntBASIC20.12■□□□□ 0.81
RXRBP28702 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC20.12■□□□□ 0.81
RXRBP28702 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC20.12■□□□□ 0.81
RXRBP28702 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RXRBP28702 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC20.12■□□□□ 0.81
RXRBP28702 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RXRBP28702 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RXRBP28702 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RXRBP28702 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RXRBP28702 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC20.11■□□□□ 0.81
RXRBP28702 E2F3P2-201ENST00000447755 1422 ntBASIC20.11■□□□□ 0.81
RXRBP28702 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RXRBP28702 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
RXRBP28702 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.11■□□□□ 0.81
RXRBP28702 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RXRBP28702 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.11■□□□□ 0.81
RXRBP28702 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RXRBP28702 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
RXRBP28702 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
RXRBP28702 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RXRBP28702 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RXRBP28702 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RXRBP28702 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RXRBP28702 AL354861.1-201ENST00000445213 355 ntBASIC20.11■□□□□ 0.81
RXRBP28702 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC20.11■□□□□ 0.81
RXRBP28702 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RXRBP28702 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC20.11■□□□□ 0.81
RXRBP28702 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC20.11■□□□□ 0.81
RXRBP28702 AC006548.2-201ENST00000605217 529 ntBASIC20.11■□□□□ 0.81
RXRBP28702 AC084781.1-201ENST00000613737 656 ntBASIC20.11■□□□□ 0.81
RXRBP28702 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC20.11■□□□□ 0.81
RXRBP28702 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
RXRBP28702 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC20.11■□□□□ 0.81
RXRBP28702 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RXRBP28702 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RXRBP28702 ABR-203ENST00000536794 2213 ntTSL 2 BASIC20.11■□□□□ 0.81
RXRBP28702 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
RXRBP28702 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RXRBP28702 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC20.11■□□□□ 0.81
RXRBP28702 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
RXRBP28702 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC20.11■□□□□ 0.81
RXRBP28702 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RXRBP28702 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RXRBP28702 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
RXRBP28702 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC20.1■□□□□ 0.81
RXRBP28702 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RXRBP28702 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RXRBP28702 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RXRBP28702 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC20.1■□□□□ 0.81
RXRBP28702 FRMPD2B-201ENST00000431305 1347 ntBASIC20.1■□□□□ 0.81
RXRBP28702 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
RXRBP28702 CTSL-202ENST00000342020 933 ntTSL 2 BASIC20.1■□□□□ 0.81
RXRBP28702 STK16-203ENST00000409516 895 ntTSL 2 BASIC20.1■□□□□ 0.81
RXRBP28702 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RXRBP28702 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RXRBP28702 HLA-DPA2-205ENST00000433582 733 ntBASIC20.1■□□□□ 0.81
RXRBP28702 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC20.1■□□□□ 0.81
RXRBP28702 MESTP3-201ENST00000503460 968 ntBASIC20.1■□□□□ 0.81
RXRBP28702 AC093909.3-201ENST00000504783 336 ntBASIC20.1■□□□□ 0.81
RXRBP28702 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC20.1■□□□□ 0.81
RXRBP28702 CR383656.3-201ENST00000551315 183 ntBASIC20.1■□□□□ 0.81
RXRBP28702 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC20.1■□□□□ 0.81
RXRBP28702 PHBP15-201ENST00000574228 665 ntBASIC20.1■□□□□ 0.81
RXRBP28702 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC20.1■□□□□ 0.81
RXRBP28702 MIR5001-201ENST00000580185 100 ntBASIC20.1■□□□□ 0.81
RXRBP28702 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC20.1■□□□□ 0.81
RXRBP28702 AP005212.2-201ENST00000584979 510 ntBASIC20.1■□□□□ 0.81
RXRBP28702 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC20.1■□□□□ 0.81
RXRBP28702 DBP-202ENST00000593500 712 ntTSL 2 BASIC20.1■□□□□ 0.81
RXRBP28702 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RXRBP28702 AP001184.1-201ENST00000637936 376 ntBASIC20.1■□□□□ 0.81
RXRBP28702 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RXRBP28702 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RXRBP28702 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RXRBP28702 USP4-203ENST00000415188 1454 ntTSL 3 BASIC20.1■□□□□ 0.81
RXRBP28702 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RXRBP28702 SHC1P1-201ENST00000425230 1745 ntBASIC20.1■□□□□ 0.81
RXRBP28702 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC20.1■□□□□ 0.81
RXRBP28702 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC20.1■□□□□ 0.81
RXRBP28702 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC20.1■□□□□ 0.81
RXRBP28702 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RXRBP28702 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RXRBP28702 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
RXRBP28702 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms