Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCANP13611 AP000356.3-201ENST00000382243 753 ntBASIC15.94■□□□□ 0.14
VCANP13611 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VCANP13611 RN7SL67P-201ENST00000492147 296 ntBASIC15.94■□□□□ 0.14
VCANP13611 AL139339.2-201ENST00000608063 657 ntBASIC15.94■□□□□ 0.14
VCANP13611 AL023803.2-201ENST00000620080 638 ntBASIC15.94■□□□□ 0.14
VCANP13611 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC15.94■□□□□ 0.14
VCANP13611 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VCANP13611 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCANP13611 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCANP13611 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.94■□□□□ 0.14
VCANP13611 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC15.94■□□□□ 0.14
VCANP13611 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
VCANP13611 AC141586.5-201ENST00000624546 2050 ntBASIC15.94■□□□□ 0.14
VCANP13611 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCANP13611 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCANP13611 NHP2-202ENST00000314397 599 ntTSL 2 BASIC15.93■□□□□ 0.14
VCANP13611 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC15.93■□□□□ 0.14
VCANP13611 AL627231.1-201ENST00000394467 1125 ntBASIC15.93■□□□□ 0.14
VCANP13611 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC15.93■□□□□ 0.14
VCANP13611 KRT18P43-201ENST00000469825 1281 ntBASIC15.93■□□□□ 0.14
VCANP13611 RN7SL258P-201ENST00000478664 300 ntBASIC15.93■□□□□ 0.14
VCANP13611 RCC2P8-201ENST00000502779 1035 ntBASIC15.93■□□□□ 0.14
VCANP13611 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC15.93■□□□□ 0.14
VCANP13611 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC15.93■□□□□ 0.14
VCANP13611 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.93■□□□□ 0.14
VCANP13611 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VCANP13611 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC15.93■□□□□ 0.14
VCANP13611 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.93■□□□□ 0.14
VCANP13611 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
VCANP13611 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VCANP13611 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VCANP13611 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VCANP13611 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC15.93■□□□□ 0.14
VCANP13611 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC15.93■□□□□ 0.14
VCANP13611 OS9-205ENST00000413095 1660 ntTSL 2 BASIC15.93■□□□□ 0.14
VCANP13611 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC15.93■□□□□ 0.14
VCANP13611 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC15.93■□□□□ 0.14
VCANP13611 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC15.93■□□□□ 0.14
VCANP13611 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.93■□□□□ 0.14
VCANP13611 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VCANP13611 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VCANP13611 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VCANP13611 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VCANP13611 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VCANP13611 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VCANP13611 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VCANP13611 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VCANP13611 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VCANP13611 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC15.93■□□□□ 0.14
VCANP13611 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC15.93■□□□□ 0.14
VCANP13611 AC100850.1-201ENST00000506768 649 ntBASIC15.93■□□□□ 0.14
VCANP13611 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC15.93■□□□□ 0.14
VCANP13611 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
VCANP13611 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC15.93■□□□□ 0.14
VCANP13611 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC15.93■□□□□ 0.14
VCANP13611 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC15.93■□□□□ 0.14
VCANP13611 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.93■□□□□ 0.14
VCANP13611 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC15.93■□□□□ 0.14
VCANP13611 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VCANP13611 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC15.93■□□□□ 0.14
VCANP13611 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
VCANP13611 MST1L-201ENST00000442552 2185 ntBASIC15.92■□□□□ 0.14
VCANP13611 AL391256.1-201ENST00000443260 1855 ntBASIC15.92■□□□□ 0.14
VCANP13611 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCANP13611 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.92■□□□□ 0.14
VCANP13611 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.92■□□□□ 0.14
VCANP13611 GAPDHP40-201ENST00000505218 1006 ntBASIC15.92■□□□□ 0.14
VCANP13611 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC15.92■□□□□ 0.14
VCANP13611 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCANP13611 ZACNP1-201ENST00000612259 710 ntBASIC15.92■□□□□ 0.14
VCANP13611 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VCANP13611 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VCANP13611 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
VCANP13611 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCANP13611 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VCANP13611 GNE-204ENST00000539208 2190 ntTSL 2 BASIC15.92■□□□□ 0.14
VCANP13611 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC15.92■□□□□ 0.14
VCANP13611 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC15.92■□□□□ 0.14
VCANP13611 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
VCANP13611 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC15.92■□□□□ 0.14
VCANP13611 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VCANP13611 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC15.92■□□□□ 0.14
VCANP13611 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC15.92■□□□□ 0.14
VCANP13611 IRF3-215ENST00000596822 823 ntTSL 3 BASIC15.92■□□□□ 0.14
VCANP13611 AL138799.1-201ENST00000448213 1675 ntBASIC15.92■□□□□ 0.14
VCANP13611 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
VCANP13611 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC15.92■□□□□ 0.14
VCANP13611 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
VCANP13611 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC15.92■□□□□ 0.14
VCANP13611 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC15.92■□□□□ 0.14
VCANP13611 LETM1P2-201ENST00000597330 2178 ntBASIC15.92■□□□□ 0.14
VCANP13611 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VCANP13611 AC015909.3-201ENST00000572855 1794 ntBASIC15.92■□□□□ 0.14
VCANP13611 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCANP13611 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCANP13611 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC15.92■□□□□ 0.14
VCANP13611 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC15.92■□□□□ 0.14
VCANP13611 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCANP13611 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms