Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 AC010327.5-201ENST00000586923 3061 ntBASIC15.93■□□□□ 0.14
VIMP08670 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC15.93■□□□□ 0.14
VIMP08670 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC15.93■□□□□ 0.14
VIMP08670 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
VIMP08670 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 MED16-201ENST00000269814 1199 ntTSL 5 BASIC15.93■□□□□ 0.14
VIMP08670 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC15.93■□□□□ 0.14
VIMP08670 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC15.93■□□□□ 0.14
VIMP08670 PPIH-202ENST00000372549 327 ntTSL 3 BASIC15.93■□□□□ 0.14
VIMP08670 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
VIMP08670 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC15.93■□□□□ 0.14
VIMP08670 TMPOP1-202ENST00000424642 1267 ntBASIC15.93■□□□□ 0.14
VIMP08670 AC245100.5-201ENST00000452108 331 ntBASIC15.93■□□□□ 0.14
VIMP08670 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC15.93■□□□□ 0.14
VIMP08670 DUX4L26-201ENST00000489078 1255 ntBASIC15.93■□□□□ 0.14
VIMP08670 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.93■□□□□ 0.14
VIMP08670 AL121956.5-201ENST00000625261 221 ntBASIC15.93■□□□□ 0.14
VIMP08670 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
VIMP08670 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC15.93■□□□□ 0.14
VIMP08670 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC15.93■□□□□ 0.14
VIMP08670 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC15.93■□□□□ 0.14
VIMP08670 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
VIMP08670 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.93■□□□□ 0.14
VIMP08670 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC15.93■□□□□ 0.14
VIMP08670 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.93■□□□□ 0.14
VIMP08670 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC15.93■□□□□ 0.14
VIMP08670 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 AP005117.1-201ENST00000584346 1413 ntBASIC15.93■□□□□ 0.14
VIMP08670 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 AC134407.2-201ENST00000625089 1978 ntBASIC15.93■□□□□ 0.14
VIMP08670 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VIMP08670 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
VIMP08670 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.93■□□□□ 0.14
VIMP08670 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.93■□□□□ 0.14
VIMP08670 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VIMP08670 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VIMP08670 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
VIMP08670 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VIMP08670 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
VIMP08670 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VIMP08670 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC15.92■□□□□ 0.14
VIMP08670 AC005252.3-201ENST00000623855 2258 ntBASIC15.92■□□□□ 0.14
VIMP08670 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.92■□□□□ 0.14
VIMP08670 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VIMP08670 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC15.92■□□□□ 0.14
VIMP08670 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VIMP08670 AC016734.2-201ENST00000624325 1377 ntBASIC15.92■□□□□ 0.14
VIMP08670 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VIMP08670 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.92■□□□□ 0.14
VIMP08670 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VIMP08670 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VIMP08670 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.92■□□□□ 0.14
VIMP08670 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC15.92■□□□□ 0.14
VIMP08670 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC15.92■□□□□ 0.14
VIMP08670 IGHV3-47-201ENST00000425060 335 ntBASIC15.92■□□□□ 0.14
VIMP08670 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
VIMP08670 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VIMP08670 TOB2P1-201ENST00000469761 992 ntBASIC15.92■□□□□ 0.14
VIMP08670 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VIMP08670 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.92■□□□□ 0.14
VIMP08670 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC15.92■□□□□ 0.14
VIMP08670 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
VIMP08670 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VIMP08670 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VIMP08670 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
VIMP08670 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VIMP08670 C1R-201ENST00000535233 2211 ntTSL 2 BASIC15.92■□□□□ 0.14
VIMP08670 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VIMP08670 WASH6P-202ENST00000359512 1437 ntBASIC15.92■□□□□ 0.14
VIMP08670 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC15.92■□□□□ 0.14
VIMP08670 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VIMP08670 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
VIMP08670 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VIMP08670 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VIMP08670 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VIMP08670 AP001282.1-201ENST00000531301 1499 ntBASIC15.91■□□□□ 0.14
VIMP08670 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VIMP08670 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.91■□□□□ 0.14
VIMP08670 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VIMP08670 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms