Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC14.23□□□□□ -0.13
SPTA1P02549 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
SPTA1P02549 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SPTA1P02549 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SPTA1P02549 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC14.23□□□□□ -0.13
SPTA1P02549 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SPTA1P02549 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SPTA1P02549 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
SPTA1P02549 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SPTA1P02549 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SPTA1P02549 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
SPTA1P02549 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SPTA1P02549 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SPTA1P02549 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
SPTA1P02549 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC14.23□□□□□ -0.13
SPTA1P02549 GGT3P-204ENST00000453783 1664 ntBASIC14.23□□□□□ -0.13
SPTA1P02549 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SPTA1P02549 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC14.23□□□□□ -0.13
SPTA1P02549 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
SPTA1P02549 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.23□□□□□ -0.13
SPTA1P02549 RN7SL574P-201ENST00000581512 297 ntBASIC14.23□□□□□ -0.13
SPTA1P02549 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SPTA1P02549 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC14.23□□□□□ -0.13
SPTA1P02549 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
SPTA1P02549 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SPTA1P02549 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SPTA1P02549 NFIC-211ENST00000641145 8399 ntBASIC14.23□□□□□ -0.13
SPTA1P02549 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SPTA1P02549 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC14.23□□□□□ -0.13
SPTA1P02549 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SPTA1P02549 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC14.22□□□□□ -0.13
SPTA1P02549 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
SPTA1P02549 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
SPTA1P02549 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
SPTA1P02549 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.22□□□□□ -0.13
SPTA1P02549 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC14.22□□□□□ -0.13
SPTA1P02549 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 AC023310.1-201ENST00000554836 735 ntBASIC14.22□□□□□ -0.13
SPTA1P02549 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC14.22□□□□□ -0.13
SPTA1P02549 AC107373.2-201ENST00000607735 490 ntBASIC14.22□□□□□ -0.13
SPTA1P02549 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC14.22□□□□□ -0.13
SPTA1P02549 AC145423.3-201ENST00000615987 467 ntBASIC14.22□□□□□ -0.13
SPTA1P02549 COX6A1P2-201ENST00000620597 330 ntBASIC14.22□□□□□ -0.13
SPTA1P02549 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
SPTA1P02549 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
SPTA1P02549 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC14.22□□□□□ -0.13
SPTA1P02549 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.22□□□□□ -0.13
SPTA1P02549 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC14.22□□□□□ -0.13
SPTA1P02549 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 AC126915.1-201ENST00000522847 1038 ntBASIC14.22□□□□□ -0.13
SPTA1P02549 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC14.22□□□□□ -0.13
SPTA1P02549 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC14.22□□□□□ -0.13
SPTA1P02549 AC135983.4-201ENST00000564116 1262 ntBASIC14.22□□□□□ -0.13
SPTA1P02549 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
SPTA1P02549 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC14.22□□□□□ -0.13
SPTA1P02549 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SPTA1P02549 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC14.22□□□□□ -0.13
SPTA1P02549 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SPTA1P02549 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SPTA1P02549 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SPTA1P02549 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SPTA1P02549 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
SPTA1P02549 UFM1-202ENST00000379649 846 ntTSL 4 BASIC14.21□□□□□ -0.13
SPTA1P02549 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SPTA1P02549 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SPTA1P02549 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SPTA1P02549 AC074338.1-201ENST00000416825 156 ntBASIC14.21□□□□□ -0.13
SPTA1P02549 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC14.21□□□□□ -0.13
SPTA1P02549 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC14.21□□□□□ -0.13
SPTA1P02549 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SPTA1P02549 PCDHB18P-201ENST00000524813 2368 ntBASIC14.21□□□□□ -0.13
SPTA1P02549 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SPTA1P02549 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
SPTA1P02549 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.21□□□□□ -0.13
SPTA1P02549 AL138709.1-201ENST00000614840 1693 ntBASIC14.21□□□□□ -0.13
SPTA1P02549 AL390961.4-201ENST00000623958 2535 ntBASIC14.21□□□□□ -0.13
SPTA1P02549 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SPTA1P02549 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms