Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LDLRP01130 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDLRP01130 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
LDLRP01130 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDLRP01130 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.34■□□□□ 0.05
LDLRP01130 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LDLRP01130 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
LDLRP01130 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDLRP01130 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDLRP01130 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDLRP01130 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDLRP01130 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.34■□□□□ 0.05
LDLRP01130 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.34■□□□□ 0.05
LDLRP01130 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.34■□□□□ 0.05
LDLRP01130 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LDLRP01130 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LDLRP01130 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.34■□□□□ 0.05
LDLRP01130 AL592424.1-201ENST00000563624 1536 ntBASIC15.34■□□□□ 0.05
LDLRP01130 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.34■□□□□ 0.05
LDLRP01130 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LDLRP01130 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
LDLRP01130 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
LDLRP01130 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.34■□□□□ 0.05
LDLRP01130 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.34■□□□□ 0.05
LDLRP01130 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.34■□□□□ 0.05
LDLRP01130 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LDLRP01130 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDLRP01130 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LDLRP01130 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
LDLRP01130 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LDLRP01130 FAM207CP-201ENST00000443486 507 ntBASIC15.34■□□□□ 0.05
LDLRP01130 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC15.34■□□□□ 0.05
LDLRP01130 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDLRP01130 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
LDLRP01130 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC15.34■□□□□ 0.05
LDLRP01130 CECR7-204ENST00000609932 568 ntTSL 2 BASIC15.34■□□□□ 0.05
LDLRP01130 AL008721.1-201ENST00000609964 604 ntBASIC15.34■□□□□ 0.05
LDLRP01130 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.34■□□□□ 0.05
LDLRP01130 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LDLRP01130 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDLRP01130 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LDLRP01130 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.34■□□□□ 0.05
LDLRP01130 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDLRP01130 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDLRP01130 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
LDLRP01130 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LDLRP01130 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC15.34■□□□□ 0.05
LDLRP01130 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
LDLRP01130 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
LDLRP01130 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
LDLRP01130 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
LDLRP01130 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.33■□□□□ 0.05
LDLRP01130 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
LDLRP01130 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.33■□□□□ 0.05
LDLRP01130 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
LDLRP01130 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.33■□□□□ 0.05
LDLRP01130 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
LDLRP01130 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
LDLRP01130 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
LDLRP01130 AC138035.3-201ENST00000622706 2791 ntBASIC15.33■□□□□ 0.04
LDLRP01130 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LDLRP01130 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
LDLRP01130 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
LDLRP01130 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LDLRP01130 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
LDLRP01130 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LDLRP01130 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LDLRP01130 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC15.33■□□□□ 0.04
LDLRP01130 MIR943-201ENST00000401286 94 ntBASIC15.33■□□□□ 0.04
LDLRP01130 AC005237.2-201ENST00000434368 219 ntBASIC15.33■□□□□ 0.04
LDLRP01130 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.33■□□□□ 0.04
LDLRP01130 UGT1A2P-201ENST00000454886 866 ntBASIC15.33■□□□□ 0.04
LDLRP01130 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.33■□□□□ 0.04
LDLRP01130 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LDLRP01130 AL512356.2-201ENST00000546955 174 ntBASIC15.33■□□□□ 0.04
LDLRP01130 CYB561-216ENST00000582297 897 ntTSL 3 BASIC15.33■□□□□ 0.04
LDLRP01130 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC15.33■□□□□ 0.04
LDLRP01130 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.33■□□□□ 0.04
LDLRP01130 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
LDLRP01130 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.33■□□□□ 0.04
LDLRP01130 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.33■□□□□ 0.04
LDLRP01130 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
LDLRP01130 PI4KAP1-204ENST00000612579 1703 ntBASIC15.33■□□□□ 0.04
LDLRP01130 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LDLRP01130 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LDLRP01130 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.33■□□□□ 0.04
LDLRP01130 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
LDLRP01130 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
LDLRP01130 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
LDLRP01130 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
LDLRP01130 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
LDLRP01130 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.33■□□□□ 0.04
LDLRP01130 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.33■□□□□ 0.04
LDLRP01130 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
LDLRP01130 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LDLRP01130 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
LDLRP01130 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.04
LDLRP01130 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LDLRP01130 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LDLRP01130 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms