Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MSH4O15457 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSH4O15457 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSH4O15457 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSH4O15457 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSH4O15457 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MSH4O15457 AC098614.1-201ENST00000368528 745 ntBASIC17.6■□□□□ 0.41
MSH4O15457 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC17.6■□□□□ 0.41
MSH4O15457 AP006294.1-201ENST00000415407 339 ntBASIC17.6■□□□□ 0.41
MSH4O15457 AL442647.2-201ENST00000429864 857 ntBASIC17.6■□□□□ 0.41
MSH4O15457 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC17.6■□□□□ 0.41
MSH4O15457 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSH4O15457 VDAC1P7-201ENST00000462417 847 ntBASIC17.6■□□□□ 0.41
MSH4O15457 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC17.6■□□□□ 0.41
MSH4O15457 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.6■□□□□ 0.41
MSH4O15457 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC17.6■□□□□ 0.41
MSH4O15457 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC17.6■□□□□ 0.41
MSH4O15457 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC17.6■□□□□ 0.41
MSH4O15457 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MSH4O15457 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSH4O15457 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MSH4O15457 AC084364.1-201ENST00000551967 1556 ntBASIC17.6■□□□□ 0.41
MSH4O15457 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSH4O15457 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MSH4O15457 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC17.6■□□□□ 0.41
MSH4O15457 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MSH4O15457 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
MSH4O15457 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MSH4O15457 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSH4O15457 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
MSH4O15457 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
MSH4O15457 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSH4O15457 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MSH4O15457 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MSH4O15457 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC17.59■□□□□ 0.41
MSH4O15457 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC17.59■□□□□ 0.41
MSH4O15457 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
MSH4O15457 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSH4O15457 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSH4O15457 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
MSH4O15457 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSH4O15457 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC17.59■□□□□ 0.41
MSH4O15457 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
MSH4O15457 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSH4O15457 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MSH4O15457 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MSH4O15457 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
MSH4O15457 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
MSH4O15457 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MSH4O15457 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSH4O15457 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
MSH4O15457 NSL1-201ENST00000366976 722 ntTSL 2 BASIC17.59■□□□□ 0.41
MSH4O15457 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC17.59■□□□□ 0.41
MSH4O15457 EDF1-203ENST00000371649 790 ntTSL 2 BASIC17.59■□□□□ 0.41
MSH4O15457 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSH4O15457 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC17.59■□□□□ 0.41
MSH4O15457 PTPA-220ENST00000436883 532 ntTSL 4 BASIC17.59■□□□□ 0.41
MSH4O15457 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC17.59■□□□□ 0.41
MSH4O15457 HNRNPA1P13-201ENST00000510646 963 ntBASIC17.59■□□□□ 0.41
MSH4O15457 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
MSH4O15457 AL359711.2-201ENST00000563105 872 ntBASIC17.59■□□□□ 0.41
MSH4O15457 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC17.59■□□□□ 0.41
MSH4O15457 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC17.59■□□□□ 0.41
MSH4O15457 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
MSH4O15457 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSH4O15457 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MSH4O15457 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSH4O15457 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.59■□□□□ 0.41
MSH4O15457 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSH4O15457 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MSH4O15457 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSH4O15457 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MSH4O15457 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSH4O15457 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.59■□□□□ 0.41
MSH4O15457 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MSH4O15457 AC020658.6-201ENST00000623564 1870 ntBASIC17.58■□□□□ 0.41
MSH4O15457 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
MSH4O15457 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC17.58■□□□□ 0.41
MSH4O15457 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MSH4O15457 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC17.58■□□□□ 0.41
MSH4O15457 AMT-224ENST00000635808 1610 ntTSL 5 BASIC17.58■□□□□ 0.41
MSH4O15457 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
MSH4O15457 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.41
MSH4O15457 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MSH4O15457 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
MSH4O15457 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.58■□□□□ 0.41
MSH4O15457 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSH4O15457 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.58■□□□□ 0.4
MSH4O15457 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSH4O15457 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC17.58■□□□□ 0.4
MSH4O15457 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
MSH4O15457 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC17.58■□□□□ 0.4
MSH4O15457 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
MSH4O15457 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC17.58■□□□□ 0.4
MSH4O15457 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSH4O15457 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC17.58■□□□□ 0.4
MSH4O15457 RBM7-207ENST00000544582 692 ntTSL 3 BASIC17.58■□□□□ 0.4
MSH4O15457 POLE2-203ENST00000553805 496 ntTSL 2 BASIC17.58■□□□□ 0.4
MSH4O15457 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
MSH4O15457 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms