Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RAP1GAP2-201ENST00000254695 6661 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC12.76□□□□□ -0.37
HMGB3O15347 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC12.76□□□□□ -0.37
HMGB3O15347 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
HMGB3O15347 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
HMGB3O15347 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC12.76□□□□□ -0.37
HMGB3O15347 AL671277.2-201ENST00000458060 996 ntBASIC12.76□□□□□ -0.37
HMGB3O15347 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC12.76□□□□□ -0.37
HMGB3O15347 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC12.76□□□□□ -0.37
HMGB3O15347 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC12.76□□□□□ -0.37
HMGB3O15347 COX5A-202ENST00000562233 441 ntTSL 3 BASIC12.76□□□□□ -0.37
HMGB3O15347 COX5A-204ENST00000567270 579 ntTSL 3 BASIC12.76□□□□□ -0.37
HMGB3O15347 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC12.76□□□□□ -0.37
HMGB3O15347 NTF6B-201ENST00000591913 560 ntBASIC12.76□□□□□ -0.37
HMGB3O15347 AC064862.7-201ENST00000604520 867 ntBASIC12.76□□□□□ -0.37
HMGB3O15347 AC020765.3-201ENST00000613051 740 ntBASIC12.76□□□□□ -0.37
HMGB3O15347 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC12.76□□□□□ -0.37
HMGB3O15347 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
HMGB3O15347 AC006011.2-201ENST00000621313 1158 ntBASIC12.76□□□□□ -0.37
HMGB3O15347 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC12.76□□□□□ -0.37
HMGB3O15347 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC12.76□□□□□ -0.37
HMGB3O15347 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC12.76□□□□□ -0.37
HMGB3O15347 DLEC1-201ENST00000308059 6426 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
HMGB3O15347 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC12.76□□□□□ -0.37
HMGB3O15347 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
HMGB3O15347 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC12.76□□□□□ -0.37
HMGB3O15347 STARD8-203ENST00000374599 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
HMGB3O15347 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC12.76□□□□□ -0.37
HMGB3O15347 HEXA-201ENST00000268097 5252 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC12.76□□□□□ -0.37
HMGB3O15347 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC12.76□□□□□ -0.37
HMGB3O15347 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC12.76□□□□□ -0.37
HMGB3O15347 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
HMGB3O15347 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC12.76□□□□□ -0.37
HMGB3O15347 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
HMGB3O15347 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
HMGB3O15347 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 AC005840.4-201ENST00000541242 2494 ntBASIC12.76□□□□□ -0.37
HMGB3O15347 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
HMGB3O15347 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HMGB3O15347 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HMGB3O15347 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HMGB3O15347 RBM33-207ENST00000401878 10149 ntAPPRIS P2 TSL 5 BASIC12.75□□□□□ -0.37
HMGB3O15347 SPOCK2-201ENST00000317376 5328 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
HMGB3O15347 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HMGB3O15347 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
HMGB3O15347 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HMGB3O15347 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC12.75□□□□□ -0.37
HMGB3O15347 CCS-201ENST00000310190 942 ntTSL 5 BASIC12.75□□□□□ -0.37
HMGB3O15347 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
HMGB3O15347 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC12.75□□□□□ -0.37
HMGB3O15347 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HMGB3O15347 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
HMGB3O15347 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC12.75□□□□□ -0.37
HMGB3O15347 PTPRK-204ENST00000368210 5025 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
HMGB3O15347 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC12.75□□□□□ -0.37
HMGB3O15347 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC12.75□□□□□ -0.37
HMGB3O15347 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
HMGB3O15347 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC12.75□□□□□ -0.37
HMGB3O15347 KDM7A-201ENST00000397560 9272 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
HMGB3O15347 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HMGB3O15347 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC12.75□□□□□ -0.37
HMGB3O15347 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HMGB3O15347 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
HMGB3O15347 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC12.75□□□□□ -0.37
HMGB3O15347 CDK2AP2P3-201ENST00000422476 372 ntBASIC12.75□□□□□ -0.37
HMGB3O15347 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC12.75□□□□□ -0.37
HMGB3O15347 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HMGB3O15347 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
HMGB3O15347 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC12.75□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms