Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 TSSK5P-201ENST00000423978 907 ntBASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 DUT-210ENST00000559935 569 ntTSL 3 BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 AL390754.1-201ENST00000619088 582 ntBASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 Z97205.2-201ENST00000564697 1639 ntBASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 AC073347.1-201ENST00000421633 2643 ntBASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
ATG4BQ9Y4P1 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 AC241585.1-201ENST00000433527 519 ntBASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 AC092384.3-202ENST00000564646 2873 ntBASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC14.93□□□□□ -0.02
ATG4BQ9Y4P1 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms