Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC16.71■□□□□ 0.26
PAAF1Q9BRP4 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
PAAF1Q9BRP4 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
PAAF1Q9BRP4 PRAL-201ENST00000624952 3286 ntBASIC16.71■□□□□ 0.26
PAAF1Q9BRP4 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 REXO1L6P-201ENST00000603433 1515 ntBASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 AC092127.1-201ENST00000567093 3455 ntBASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 AC099336.1-201ENST00000417053 1171 ntBASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 KLF2P4-201ENST00000451959 1225 ntBASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 AC009486.1-201ENST00000569860 813 ntBASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 MIR6799-201ENST00000620297 69 ntBASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PAAF1Q9BRP4 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 AC022188.1-201ENST00000620960 1664 ntBASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 AL355864.2-201ENST00000447420 863 ntBASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 AC007551.1-201ENST00000457394 519 ntBASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 APRT-204ENST00000563655 709 ntTSL 5 BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 GNRHR2-203ENST00000581100 1187 ntBASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 AC093813.1-201ENST00000605066 256 ntBASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.69■□□□□ 0.26
PAAF1Q9BRP4 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 AC009090.5-201ENST00000624886 2285 ntBASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PAAF1Q9BRP4 STX1A-203ENST00000395155 783 ntTSL 2 BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms