Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 AC074044.1-201ENST00000609673 707 ntBASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 AL162727.3-201ENST00000635661 2787 ntBASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 TARDBPP1-201ENST00000442013 1203 ntBASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 TIMM17BP1-201ENST00000545713 516 ntBASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 AC004233.3-201ENST00000607794 1269 ntBASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 Z97205.2-201ENST00000564697 1639 ntBASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTCHD1Q96NR3 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTCHD1Q96NR3 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.89□□□□□ -0.03
PTCHD1Q96NR3 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTCHD1Q96NR3 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTCHD1Q96NR3 ACE-203ENST00000413513 2237 ntTSL 2 BASIC14.89□□□□□ -0.03
PTCHD1Q96NR3 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTCHD1Q96NR3 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PTCHD1Q96NR3 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC14.89□□□□□ -0.03
PTCHD1Q96NR3 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PTCHD1Q96NR3 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTCHD1Q96NR3 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC14.89□□□□□ -0.03
PTCHD1Q96NR3 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTCHD1Q96NR3 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
PTCHD1Q96NR3 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.89□□□□□ -0.03
PTCHD1Q96NR3 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
PTCHD1Q96NR3 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC14.89□□□□□ -0.03
PTCHD1Q96NR3 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PTCHD1Q96NR3 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.89□□□□□ -0.03
PTCHD1Q96NR3 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.89□□□□□ -0.03
PTCHD1Q96NR3 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.89□□□□□ -0.03
PTCHD1Q96NR3 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.89□□□□□ -0.03
PTCHD1Q96NR3 AC104794.3-201ENST00000566840 1248 ntBASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms