Protein–RNA interactions for Protein: Q96MX0

CMTM3, CKLF-like MARVEL transmembrane domain-containing protein 3, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3Q96MX0 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 PCDHGB8P-201ENST00000502926 1973 ntBASIC13.62□□□□□ -0.23
CMTM3Q96MX0 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 AC004987.2-201ENST00000395959 1148 ntBASIC13.62□□□□□ -0.23
CMTM3Q96MX0 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 FGFR3P6-201ENST00000457012 610 ntBASIC13.62□□□□□ -0.23
CMTM3Q96MX0 AC136632.2-201ENST00000512891 861 ntBASIC13.62□□□□□ -0.23
CMTM3Q96MX0 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 CYGB-205ENST00000590175 830 ntTSL 3 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 AC011467.4-201ENST00000594891 528 ntBASIC13.62□□□□□ -0.23
CMTM3Q96MX0 DBP-204ENST00000599385 709 ntTSL 3 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
CMTM3Q96MX0 ACE3P-201ENST00000423435 1973 ntBASIC13.62□□□□□ -0.23
CMTM3Q96MX0 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 AC018892.3-201ENST00000623986 2499 ntBASIC13.61□□□□□ -0.23
CMTM3Q96MX0 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 PAM16-215ENST00000577031 548 ntTSL 4 BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 AC025062.2-201ENST00000605477 670 ntBASIC13.61□□□□□ -0.23
CMTM3Q96MX0 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CMTM3Q96MX0 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.6□□□□□ -0.23
CMTM3Q96MX0 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CMTM3Q96MX0 REXO1L2P-201ENST00000425429 2069 ntBASIC13.6□□□□□ -0.23
CMTM3Q96MX0 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC13.6□□□□□ -0.23
CMTM3Q96MX0 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms