Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC42Q96M95 MARS-233ENST00000628866 2583 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC42Q96M95 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC42Q96M95 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC42Q96M95 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC42Q96M95 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC42Q96M95 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC42Q96M95 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.09■□□□□ 0.33
CCDC42Q96M95 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC42Q96M95 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CCDC42Q96M95 AC034105.1-201ENST00000563488 319 ntBASIC17.09■□□□□ 0.33
CCDC42Q96M95 AC145285.3-201ENST00000564603 959 ntBASIC17.09■□□□□ 0.33
CCDC42Q96M95 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.09■□□□□ 0.33
CCDC42Q96M95 SLC25A6P4-201ENST00000586535 553 ntBASIC17.09■□□□□ 0.33
CCDC42Q96M95 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.09■□□□□ 0.33
CCDC42Q96M95 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC42Q96M95 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC42Q96M95 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC42Q96M95 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC42Q96M95 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC42Q96M95 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC42Q96M95 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CCDC42Q96M95 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC42Q96M95 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC42Q96M95 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC42Q96M95 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC42Q96M95 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC42Q96M95 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC42Q96M95 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC42Q96M95 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC42Q96M95 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC42Q96M95 CICP23-201ENST00000605013 2741 ntBASIC17.08■□□□□ 0.33
CCDC42Q96M95 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC17.08■□□□□ 0.33
CCDC42Q96M95 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC42Q96M95 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC42Q96M95 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
CCDC42Q96M95 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.08■□□□□ 0.32
CCDC42Q96M95 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC42Q96M95 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.32
CCDC42Q96M95 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC42Q96M95 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC42Q96M95 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
CCDC42Q96M95 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC17.08■□□□□ 0.32
CCDC42Q96M95 AC007967.2-201ENST00000432613 625 ntBASIC17.08■□□□□ 0.32
CCDC42Q96M95 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.08■□□□□ 0.32
CCDC42Q96M95 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC42Q96M95 AC099522.2-201ENST00000607001 744 ntBASIC17.08■□□□□ 0.32
CCDC42Q96M95 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC42Q96M95 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CCDC42Q96M95 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC42Q96M95 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC42Q96M95 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC17.08■□□□□ 0.32
CCDC42Q96M95 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC42Q96M95 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC42Q96M95 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC42Q96M95 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC42Q96M95 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
CCDC42Q96M95 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC42Q96M95 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC42Q96M95 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
CCDC42Q96M95 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
CCDC42Q96M95 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
CCDC42Q96M95 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC42Q96M95 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC42Q96M95 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC17.07■□□□□ 0.32
CCDC42Q96M95 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.07■□□□□ 0.32
CCDC42Q96M95 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CCDC42Q96M95 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC17.07■□□□□ 0.32
CCDC42Q96M95 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CCDC42Q96M95 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC42Q96M95 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC42Q96M95 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC17.07■□□□□ 0.32
CCDC42Q96M95 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC42Q96M95 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC42Q96M95 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC17.07■□□□□ 0.32
CCDC42Q96M95 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC42Q96M95 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC42Q96M95 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC42Q96M95 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC17.07■□□□□ 0.32
CCDC42Q96M95 HLA-A-201ENST00000376802 1334 ntBASIC17.07■□□□□ 0.32
CCDC42Q96M95 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC42Q96M95 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC42Q96M95 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.07■□□□□ 0.32
CCDC42Q96M95 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.07■□□□□ 0.32
CCDC42Q96M95 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
CCDC42Q96M95 RPS8P6-201ENST00000426177 609 ntBASIC17.07■□□□□ 0.32
CCDC42Q96M95 AL645939.2-201ENST00000427340 991 ntBASIC17.07■□□□□ 0.32
CCDC42Q96M95 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.07■□□□□ 0.32
CCDC42Q96M95 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.07■□□□□ 0.32
CCDC42Q96M95 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC17.07■□□□□ 0.32
CCDC42Q96M95 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.07■□□□□ 0.32
CCDC42Q96M95 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.07■□□□□ 0.32
CCDC42Q96M95 AL450472.2-201ENST00000603663 1156 ntBASIC17.07■□□□□ 0.32
CCDC42Q96M95 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.07■□□□□ 0.32
CCDC42Q96M95 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC42Q96M95 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC42Q96M95 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC42Q96M95 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC17.07■□□□□ 0.32
CCDC42Q96M95 AC148477.4-201ENST00000613430 1793 ntBASIC17.07■□□□□ 0.32
CCDC42Q96M95 AL136982.4-201ENST00000437689 1740 ntBASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms