Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 AC022532.1-201ENST00000624563 1728 ntBASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 AC004987.2-201ENST00000395959 1148 ntBASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 AC044860.1-202ENST00000559481 777 ntBASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 AC026979.3-201ENST00000607315 403 ntBASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 AC004840.1-201ENST00000636359 365 ntBASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC18.86■□□□□ 0.61
CHMP4CQ96CF2 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 AL691432.1-201ENST00000596308 1422 ntBASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 SPDYE18-201ENST00000510091 1050 ntBASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 EHF-205ENST00000527935 557 ntTSL 2 BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
CHMP4CQ96CF2 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms