Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TTC28Q96AY4 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TTC28Q96AY4 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TTC28Q96AY4 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
TTC28Q96AY4 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC15.61■□□□□ 0.09
TTC28Q96AY4 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
TTC28Q96AY4 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TTC28Q96AY4 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TTC28Q96AY4 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TTC28Q96AY4 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC15.61■□□□□ 0.09
TTC28Q96AY4 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
TTC28Q96AY4 NHP2P1-201ENST00000335274 462 ntBASIC15.61■□□□□ 0.09
TTC28Q96AY4 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC15.61■□□□□ 0.09
TTC28Q96AY4 AC114812.1-204ENST00000449669 728 ntBASIC15.61■□□□□ 0.09
TTC28Q96AY4 FAM86B3P-203ENST00000523992 854 ntBASIC15.61■□□□□ 0.09
TTC28Q96AY4 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC15.61■□□□□ 0.09
TTC28Q96AY4 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC15.61■□□□□ 0.09
TTC28Q96AY4 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC15.61■□□□□ 0.09
TTC28Q96AY4 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
TTC28Q96AY4 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC15.61■□□□□ 0.09
TTC28Q96AY4 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TTC28Q96AY4 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.61■□□□□ 0.09
TTC28Q96AY4 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TTC28Q96AY4 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TTC28Q96AY4 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC15.61■□□□□ 0.09
TTC28Q96AY4 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TTC28Q96AY4 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TTC28Q96AY4 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
TTC28Q96AY4 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC15.61■□□□□ 0.09
TTC28Q96AY4 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
TTC28Q96AY4 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TTC28Q96AY4 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
TTC28Q96AY4 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
TTC28Q96AY4 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.61■□□□□ 0.09
TTC28Q96AY4 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC15.61■□□□□ 0.09
TTC28Q96AY4 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC15.6■□□□□ 0.09
TTC28Q96AY4 AC018892.3-201ENST00000623986 2499 ntBASIC15.6■□□□□ 0.09
TTC28Q96AY4 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TTC28Q96AY4 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TTC28Q96AY4 BCL2L12P1-201ENST00000508390 733 ntBASIC15.6■□□□□ 0.09
TTC28Q96AY4 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC15.6■□□□□ 0.09
TTC28Q96AY4 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC15.6■□□□□ 0.09
TTC28Q96AY4 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
TTC28Q96AY4 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TTC28Q96AY4 AL109837.1-201ENST00000603272 613 ntBASIC15.6■□□□□ 0.09
TTC28Q96AY4 AC084781.1-201ENST00000613737 656 ntBASIC15.6■□□□□ 0.09
TTC28Q96AY4 CMC2-224ENST00000630396 481 ntTSL 5 BASIC15.6■□□□□ 0.09
TTC28Q96AY4 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.6■□□□□ 0.09
TTC28Q96AY4 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TTC28Q96AY4 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TTC28Q96AY4 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TTC28Q96AY4 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TTC28Q96AY4 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.6■□□□□ 0.09
TTC28Q96AY4 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC15.6■□□□□ 0.09
TTC28Q96AY4 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TTC28Q96AY4 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC15.6■□□□□ 0.09
TTC28Q96AY4 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TTC28Q96AY4 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TTC28Q96AY4 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TTC28Q96AY4 AL391256.1-201ENST00000443260 1855 ntBASIC15.6■□□□□ 0.09
TTC28Q96AY4 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
TTC28Q96AY4 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
TTC28Q96AY4 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC15.6■□□□□ 0.09
TTC28Q96AY4 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC15.6■□□□□ 0.09
TTC28Q96AY4 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC15.6■□□□□ 0.09
TTC28Q96AY4 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
TTC28Q96AY4 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TTC28Q96AY4 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC15.6■□□□□ 0.09
TTC28Q96AY4 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TTC28Q96AY4 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TTC28Q96AY4 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TTC28Q96AY4 CCL25-202ENST00000315626 450 ntTSL 2 BASIC15.59■□□□□ 0.09
TTC28Q96AY4 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC15.59■□□□□ 0.09
TTC28Q96AY4 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC15.59■□□□□ 0.09
TTC28Q96AY4 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.59■□□□□ 0.09
TTC28Q96AY4 MIR5001-201ENST00000580185 100 ntBASIC15.59■□□□□ 0.09
TTC28Q96AY4 AC254633.1-201ENST00000606790 345 ntBASIC15.59■□□□□ 0.09
TTC28Q96AY4 AC090510.3-201ENST00000615831 821 ntBASIC15.59■□□□□ 0.09
TTC28Q96AY4 AC138466.3-201ENST00000619983 221 ntBASIC15.59■□□□□ 0.09
TTC28Q96AY4 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.59■□□□□ 0.09
TTC28Q96AY4 AP001184.1-201ENST00000637936 376 ntBASIC15.59■□□□□ 0.09
TTC28Q96AY4 AL672207.1-201ENST00000328462 1570 ntBASIC15.59■□□□□ 0.09
TTC28Q96AY4 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC15.59■□□□□ 0.09
TTC28Q96AY4 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TTC28Q96AY4 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.59■□□□□ 0.09
TTC28Q96AY4 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TTC28Q96AY4 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.59■□□□□ 0.09
TTC28Q96AY4 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
TTC28Q96AY4 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC15.59■□□□□ 0.09
TTC28Q96AY4 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TTC28Q96AY4 AC093503.3-201ENST00000624917 2352 ntBASIC15.59■□□□□ 0.09
TTC28Q96AY4 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TTC28Q96AY4 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TTC28Q96AY4 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.59■□□□□ 0.09
TTC28Q96AY4 TSPY25P-201ENST00000429463 745 ntBASIC15.59■□□□□ 0.09
TTC28Q96AY4 AC090820.1-201ENST00000519722 591 ntBASIC15.59■□□□□ 0.09
TTC28Q96AY4 AC106820.3-201ENST00000561653 397 ntBASIC15.59■□□□□ 0.09
TTC28Q96AY4 MED11-202ENST00000573708 802 ntTSL 2 BASIC15.59■□□□□ 0.09
TTC28Q96AY4 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC15.59■□□□□ 0.09
TTC28Q96AY4 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms