Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 AC027307.2-201ENST00000591252 911 ntBASIC14.23□□□□□ -0.13
PTP4A1Q93096 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC14.23□□□□□ -0.13
PTP4A1Q93096 C20orf181-201ENST00000623918 480 ntBASIC14.23□□□□□ -0.13
PTP4A1Q93096 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTP4A1Q93096 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
PTP4A1Q93096 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PTP4A1Q93096 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PTP4A1Q93096 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTP4A1Q93096 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.23□□□□□ -0.13
PTP4A1Q93096 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC14.23□□□□□ -0.13
PTP4A1Q93096 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTP4A1Q93096 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTP4A1Q93096 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTP4A1Q93096 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.23□□□□□ -0.13
PTP4A1Q93096 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTP4A1Q93096 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PTP4A1Q93096 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTP4A1Q93096 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PTP4A1Q93096 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTP4A1Q93096 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
PTP4A1Q93096 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
PTP4A1Q93096 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTP4A1Q93096 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTP4A1Q93096 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTP4A1Q93096 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTP4A1Q93096 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
PTP4A1Q93096 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PTP4A1Q93096 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PTP4A1Q93096 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTP4A1Q93096 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.22□□□□□ -0.13
PTP4A1Q93096 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTP4A1Q93096 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PTP4A1Q93096 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTP4A1Q93096 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
PTP4A1Q93096 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTP4A1Q93096 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTP4A1Q93096 COX10-202ENST00000429152 875 ntTSL 2 BASIC14.22□□□□□ -0.13
PTP4A1Q93096 AL671277.1-201ENST00000429656 993 ntBASIC14.22□□□□□ -0.13
PTP4A1Q93096 MKNK2P1-201ENST00000437526 628 ntBASIC14.22□□□□□ -0.13
PTP4A1Q93096 ACTG1P14-201ENST00000446382 1122 ntBASIC14.22□□□□□ -0.13
PTP4A1Q93096 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC14.22□□□□□ -0.13
PTP4A1Q93096 FAM86C2P-203ENST00000528684 1004 ntBASIC14.22□□□□□ -0.13
PTP4A1Q93096 AC008267.7-201ENST00000624570 1194 ntBASIC14.22□□□□□ -0.13
PTP4A1Q93096 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTP4A1Q93096 LINC01101-201ENST00000622953 1884 ntBASIC14.22□□□□□ -0.13
PTP4A1Q93096 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTP4A1Q93096 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTP4A1Q93096 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTP4A1Q93096 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTP4A1Q93096 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTP4A1Q93096 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
PTP4A1Q93096 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.21□□□□□ -0.13
PTP4A1Q93096 AL359258.3-201ENST00000622910 2331 ntBASIC14.21□□□□□ -0.13
PTP4A1Q93096 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTP4A1Q93096 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
PTP4A1Q93096 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
PTP4A1Q93096 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTP4A1Q93096 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTP4A1Q93096 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
PTP4A1Q93096 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.21□□□□□ -0.13
PTP4A1Q93096 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTP4A1Q93096 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTP4A1Q93096 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTP4A1Q93096 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
PTP4A1Q93096 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
PTP4A1Q93096 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTP4A1Q93096 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.21□□□□□ -0.13
PTP4A1Q93096 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PTP4A1Q93096 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
PTP4A1Q93096 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PTP4A1Q93096 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
PTP4A1Q93096 YBX2P1-201ENST00000394192 760 ntBASIC14.21□□□□□ -0.13
PTP4A1Q93096 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC14.21□□□□□ -0.13
PTP4A1Q93096 AC142381.1-201ENST00000426099 345 ntBASIC14.21□□□□□ -0.13
PTP4A1Q93096 FAM58CP-201ENST00000435741 640 ntBASIC14.21□□□□□ -0.13
PTP4A1Q93096 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC14.21□□□□□ -0.13
PTP4A1Q93096 PHKG1P2-201ENST00000457537 863 ntBASIC14.21□□□□□ -0.13
PTP4A1Q93096 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC14.21□□□□□ -0.13
PTP4A1Q93096 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTP4A1Q93096 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC14.21□□□□□ -0.13
PTP4A1Q93096 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC14.21□□□□□ -0.13
PTP4A1Q93096 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC14.21□□□□□ -0.13
PTP4A1Q93096 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PTP4A1Q93096 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTP4A1Q93096 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PTP4A1Q93096 AL450472.2-201ENST00000603663 1156 ntBASIC14.21□□□□□ -0.13
PTP4A1Q93096 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC14.21□□□□□ -0.13
PTP4A1Q93096 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
PTP4A1Q93096 AC091812.2-201ENST00000619081 385 ntBASIC14.21□□□□□ -0.13
PTP4A1Q93096 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC14.21□□□□□ -0.13
PTP4A1Q93096 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC14.21□□□□□ -0.13
PTP4A1Q93096 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PTP4A1Q93096 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTP4A1Q93096 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTP4A1Q93096 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC14.21□□□□□ -0.13
PTP4A1Q93096 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
PTP4A1Q93096 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC14.21□□□□□ -0.14
PTP4A1Q93096 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.21□□□□□ -0.14
PTP4A1Q93096 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PTP4A1Q93096 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms