Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
UBE3BQ7Z3V4 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
UBE3BQ7Z3V4 AL513523.2-202ENST00000427283 2040 ntBASIC19.56■□□□□ 0.72
UBE3BQ7Z3V4 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC19.56■□□□□ 0.72
UBE3BQ7Z3V4 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
UBE3BQ7Z3V4 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC19.56■□□□□ 0.72
UBE3BQ7Z3V4 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 PCDHA1-201ENST00000378133 2726 ntBASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 MIR658-201ENST00000385210 100 ntBASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 AC022210.1-201ENST00000449856 793 ntBASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
UBE3BQ7Z3V4 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 AC092127.1-201ENST00000567093 3455 ntBASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 AC119751.2-201ENST00000504529 210 ntBASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 MIR4259-201ENST00000584466 101 ntBASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 MIR6805-201ENST00000615055 62 ntBASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
UBE3BQ7Z3V4 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.53■□□□□ 0.72
UBE3BQ7Z3V4 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
UBE3BQ7Z3V4 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC19.53■□□□□ 0.72
UBE3BQ7Z3V4 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
UBE3BQ7Z3V4 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
UBE3BQ7Z3V4 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
UBE3BQ7Z3V4 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC19.53■□□□□ 0.72
UBE3BQ7Z3V4 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
UBE3BQ7Z3V4 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
UBE3BQ7Z3V4 ANKRD19P-201ENST00000338192 862 ntBASIC19.53■□□□□ 0.72
UBE3BQ7Z3V4 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
UBE3BQ7Z3V4 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
UBE3BQ7Z3V4 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC19.53■□□□□ 0.72
UBE3BQ7Z3V4 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
UBE3BQ7Z3V4 AC234783.1-201ENST00000441761 496 ntBASIC19.53■□□□□ 0.72
UBE3BQ7Z3V4 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC19.53■□□□□ 0.72
UBE3BQ7Z3V4 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms