Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC11.18□□□□□ -0.62
CKS1BP61024 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC11.18□□□□□ -0.62
CKS1BP61024 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
CKS1BP61024 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC11.18□□□□□ -0.62
CKS1BP61024 AC066615.1-201ENST00000640911 628 ntBASIC11.18□□□□□ -0.62
CKS1BP61024 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CKS1BP61024 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CKS1BP61024 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC11.18□□□□□ -0.62
CKS1BP61024 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
CKS1BP61024 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC11.18□□□□□ -0.62
CKS1BP61024 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CKS1BP61024 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CKS1BP61024 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC11.18□□□□□ -0.62
CKS1BP61024 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC11.18□□□□□ -0.62
CKS1BP61024 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CKS1BP61024 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
CKS1BP61024 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC11.18□□□□□ -0.62
CKS1BP61024 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC11.18□□□□□ -0.62
CKS1BP61024 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CKS1BP61024 AL031595.1-201ENST00000623969 4709 ntBASIC11.18□□□□□ -0.62
CKS1BP61024 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC11.18□□□□□ -0.62
CKS1BP61024 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC11.18□□□□□ -0.62
CKS1BP61024 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CKS1BP61024 TFIP11-201ENST00000405938 2896 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
CKS1BP61024 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC11.18□□□□□ -0.62
CKS1BP61024 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
CKS1BP61024 DNM3-202ENST00000367731 7613 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC11.17□□□□□ -0.62
CKS1BP61024 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 NRP2-204ENST00000360409 6662 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 BEND3P1-201ENST00000421591 1944 ntBASIC11.17□□□□□ -0.62
CKS1BP61024 AC243591.1-201ENST00000452967 1364 ntBASIC11.17□□□□□ -0.62
CKS1BP61024 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC11.17□□□□□ -0.62
CKS1BP61024 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC11.17□□□□□ -0.62
CKS1BP61024 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC11.17□□□□□ -0.62
CKS1BP61024 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC11.17□□□□□ -0.62
CKS1BP61024 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 C2-206ENST00000442278 2434 ntTSL 2 BASIC11.17□□□□□ -0.62
CKS1BP61024 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC11.17□□□□□ -0.62
CKS1BP61024 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC11.17□□□□□ -0.62
CKS1BP61024 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
CKS1BP61024 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 ARGLU1-203ENST00000400198 3390 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC11.17□□□□□ -0.62
CKS1BP61024 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 STAT4-202ENST00000392320 2822 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 SOD2-201ENST00000337404 991 ntTSL 2 BASIC11.17□□□□□ -0.62
CKS1BP61024 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC11.17□□□□□ -0.62
CKS1BP61024 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC11.17□□□□□ -0.62
CKS1BP61024 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC11.17□□□□□ -0.62
CKS1BP61024 AC026396.1-201ENST00000419388 421 ntBASIC11.17□□□□□ -0.62
CKS1BP61024 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 KRT17P6-201ENST00000453795 1220 ntBASIC11.17□□□□□ -0.62
CKS1BP61024 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 DUX4L26-201ENST00000489078 1255 ntBASIC11.17□□□□□ -0.62
CKS1BP61024 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC11.17□□□□□ -0.62
CKS1BP61024 PPOX-219ENST00000544598 813 ntTSL 2 BASIC11.17□□□□□ -0.62
CKS1BP61024 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC11.17□□□□□ -0.62
CKS1BP61024 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC11.17□□□□□ -0.62
CKS1BP61024 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC11.17□□□□□ -0.62
CKS1BP61024 AC010331.1-201ENST00000611423 582 ntBASIC11.17□□□□□ -0.62
CKS1BP61024 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC11.17□□□□□ -0.62
CKS1BP61024 SELPLG-203ENST00000550948 2256 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC11.17□□□□□ -0.62
CKS1BP61024 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC11.17□□□□□ -0.62
CKS1BP61024 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 TCAF2-201ENST00000357344 2958 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 YWHAEP7-202ENST00000620903 2455 ntTSL 2 BASIC11.17□□□□□ -0.62
CKS1BP61024 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC11.17□□□□□ -0.62
CKS1BP61024 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC11.17□□□□□ -0.62
CKS1BP61024 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 KCNIP3-201ENST00000295225 2940 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
CKS1BP61024 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
CKS1BP61024 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CKS1BP61024 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms