Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIG3P49916 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
LIG3P49916 LINC00895-201ENST00000629028 1637 ntBASIC16.7■□□□□ 0.26
LIG3P49916 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.7■□□□□ 0.26
LIG3P49916 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.7■□□□□ 0.26
LIG3P49916 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.7■□□□□ 0.26
LIG3P49916 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.7■□□□□ 0.26
LIG3P49916 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
LIG3P49916 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LIG3P49916 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
LIG3P49916 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC16.7■□□□□ 0.26
LIG3P49916 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LIG3P49916 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LIG3P49916 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LIG3P49916 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.7■□□□□ 0.26
LIG3P49916 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.7■□□□□ 0.26
LIG3P49916 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
LIG3P49916 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIG3P49916 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LIG3P49916 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
LIG3P49916 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIG3P49916 AC004461.1-201ENST00000412461 403 ntBASIC16.7■□□□□ 0.26
LIG3P49916 TFAMP1-201ENST00000412727 736 ntBASIC16.7■□□□□ 0.26
LIG3P49916 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LIG3P49916 SPDYE11-202ENST00000450699 704 ntBASIC16.7■□□□□ 0.26
LIG3P49916 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.7■□□□□ 0.26
LIG3P49916 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LIG3P49916 KRT8P48-201ENST00000515599 1220 ntBASIC16.7■□□□□ 0.26
LIG3P49916 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
LIG3P49916 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIG3P49916 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.7■□□□□ 0.26
LIG3P49916 SPDYE9P-201ENST00000570642 692 ntBASIC16.7■□□□□ 0.26
LIG3P49916 AC022145.2-201ENST00000598203 171 ntBASIC16.7■□□□□ 0.26
LIG3P49916 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIG3P49916 SPDYE10P-202ENST00000612005 668 ntBASIC16.7■□□□□ 0.26
LIG3P49916 SPDYE8P-202ENST00000612377 668 ntBASIC16.7■□□□□ 0.26
LIG3P49916 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC16.7■□□□□ 0.26
LIG3P49916 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC16.7■□□□□ 0.26
LIG3P49916 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC16.7■□□□□ 0.26
LIG3P49916 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC16.7■□□□□ 0.26
LIG3P49916 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIG3P49916 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LIG3P49916 AL671710.1-201ENST00000610245 2349 ntBASIC16.7■□□□□ 0.26
LIG3P49916 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.7■□□□□ 0.26
LIG3P49916 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC16.7■□□□□ 0.26
LIG3P49916 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
LIG3P49916 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIG3P49916 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.7■□□□□ 0.26
LIG3P49916 COCH-203ENST00000460581 2688 ntTSL 2 BASIC16.7■□□□□ 0.26
LIG3P49916 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIG3P49916 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
LIG3P49916 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIG3P49916 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.7■□□□□ 0.26
LIG3P49916 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
LIG3P49916 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
LIG3P49916 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.69■□□□□ 0.26
LIG3P49916 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIG3P49916 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
LIG3P49916 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LIG3P49916 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIG3P49916 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
LIG3P49916 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC16.69■□□□□ 0.26
LIG3P49916 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIG3P49916 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIG3P49916 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LIG3P49916 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC16.69■□□□□ 0.26
LIG3P49916 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.69■□□□□ 0.26
LIG3P49916 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIG3P49916 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIG3P49916 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LIG3P49916 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
LIG3P49916 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIG3P49916 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIG3P49916 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC16.69■□□□□ 0.26
LIG3P49916 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.69■□□□□ 0.26
LIG3P49916 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIG3P49916 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LIG3P49916 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
LIG3P49916 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.69■□□□□ 0.26
LIG3P49916 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LIG3P49916 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.69■□□□□ 0.26
LIG3P49916 AP002490.2-201ENST00000524791 560 ntBASIC16.69■□□□□ 0.26
LIG3P49916 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
LIG3P49916 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.69■□□□□ 0.26
LIG3P49916 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
LIG3P49916 AL135744.1-201ENST00000565098 629 ntBASIC16.69■□□□□ 0.26
LIG3P49916 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
LIG3P49916 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.69■□□□□ 0.26
LIG3P49916 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LIG3P49916 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.69■□□□□ 0.26
LIG3P49916 SSR4P1-203ENST00000599569 2260 ntBASIC16.69■□□□□ 0.26
LIG3P49916 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIG3P49916 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LIG3P49916 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.69■□□□□ 0.26
LIG3P49916 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LIG3P49916 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIG3P49916 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
LIG3P49916 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIG3P49916 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
LIG3P49916 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms