Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LHX1P48742 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
LHX1P48742 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
LHX1P48742 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LHX1P48742 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LHX1P48742 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.65■□□□□ 0.26
LHX1P48742 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LHX1P48742 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
LHX1P48742 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
LHX1P48742 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.64■□□□□ 0.26
LHX1P48742 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.64■□□□□ 0.25
LHX1P48742 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
LHX1P48742 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LHX1P48742 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.64■□□□□ 0.25
LHX1P48742 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.64■□□□□ 0.25
LHX1P48742 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
LHX1P48742 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LHX1P48742 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
LHX1P48742 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.64■□□□□ 0.25
LHX1P48742 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
LHX1P48742 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LHX1P48742 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LHX1P48742 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.64■□□□□ 0.25
LHX1P48742 AL512384.1-201ENST00000406683 331 ntBASIC16.64■□□□□ 0.25
LHX1P48742 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
LHX1P48742 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC16.64■□□□□ 0.25
LHX1P48742 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
LHX1P48742 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC16.64■□□□□ 0.25
LHX1P48742 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC16.64■□□□□ 0.25
LHX1P48742 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LHX1P48742 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC16.64■□□□□ 0.25
LHX1P48742 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LHX1P48742 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.64■□□□□ 0.25
LHX1P48742 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LHX1P48742 GPX4-206ENST00000588919 803 ntTSL 2 BASIC16.64■□□□□ 0.25
LHX1P48742 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.64■□□□□ 0.25
LHX1P48742 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
LHX1P48742 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.64■□□□□ 0.25
LHX1P48742 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.64■□□□□ 0.25
LHX1P48742 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.64■□□□□ 0.25
LHX1P48742 LINC02199-201ENST00000506655 2702 ntBASIC16.64■□□□□ 0.25
LHX1P48742 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LHX1P48742 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LHX1P48742 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
LHX1P48742 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
LHX1P48742 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.64■□□□□ 0.25
LHX1P48742 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
LHX1P48742 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
LHX1P48742 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
LHX1P48742 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LHX1P48742 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX1P48742 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
LHX1P48742 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX1P48742 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX1P48742 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
LHX1P48742 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LHX1P48742 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX1P48742 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC16.63■□□□□ 0.25
LHX1P48742 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX1P48742 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
LHX1P48742 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.63■□□□□ 0.25
LHX1P48742 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX1P48742 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX1P48742 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC16.63■□□□□ 0.25
LHX1P48742 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
LHX1P48742 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LHX1P48742 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC16.63■□□□□ 0.25
LHX1P48742 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.63■□□□□ 0.25
LHX1P48742 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.63■□□□□ 0.25
LHX1P48742 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.63■□□□□ 0.25
LHX1P48742 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
LHX1P48742 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.63■□□□□ 0.25
LHX1P48742 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.63■□□□□ 0.25
LHX1P48742 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX1P48742 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX1P48742 INTS4P2-202ENST00000614726 2019 ntBASIC16.63■□□□□ 0.25
LHX1P48742 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX1P48742 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.63■□□□□ 0.25
LHX1P48742 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LHX1P48742 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX1P48742 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
LHX1P48742 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX1P48742 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX1P48742 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LHX1P48742 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
LHX1P48742 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.62■□□□□ 0.25
LHX1P48742 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LHX1P48742 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
LHX1P48742 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
LHX1P48742 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.62■□□□□ 0.25
LHX1P48742 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.62■□□□□ 0.25
LHX1P48742 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
LHX1P48742 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.62■□□□□ 0.25
LHX1P48742 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LHX1P48742 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.62■□□□□ 0.25
LHX1P48742 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LHX1P48742 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
LHX1P48742 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.62■□□□□ 0.25
LHX1P48742 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC16.62■□□□□ 0.25
LHX1P48742 AL162726.2-201ENST00000438986 1017 ntBASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms