Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL008707.1-201ENST00000422498 534 ntBASIC20.29■□□□□ 0.84
COL18A1P39060 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC20.29■□□□□ 0.84
COL18A1P39060 MAGEA5-201ENST00000446757 942 ntBASIC20.29■□□□□ 0.84
COL18A1P39060 AL133466.1-201ENST00000447582 150 ntBASIC20.29■□□□□ 0.84
COL18A1P39060 AC022616.1-201ENST00000518688 554 ntBASIC20.29■□□□□ 0.84
COL18A1P39060 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC20.29■□□□□ 0.84
COL18A1P39060 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
COL18A1P39060 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
COL18A1P39060 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL18A1P39060 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
COL18A1P39060 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL18A1P39060 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC20.29■□□□□ 0.84
COL18A1P39060 KRT8P29-201ENST00000420409 1371 ntBASIC20.29■□□□□ 0.84
COL18A1P39060 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL18A1P39060 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
COL18A1P39060 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
COL18A1P39060 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
COL18A1P39060 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL18A1P39060 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL18A1P39060 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC20.29■□□□□ 0.84
COL18A1P39060 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC20.29■□□□□ 0.84
COL18A1P39060 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC20.29■□□□□ 0.84
COL18A1P39060 AC125604.1-201ENST00000496255 707 ntBASIC20.29■□□□□ 0.84
COL18A1P39060 AC005740.2-201ENST00000511085 419 ntBASIC20.29■□□□□ 0.84
COL18A1P39060 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
COL18A1P39060 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL18A1P39060 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
COL18A1P39060 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL18A1P39060 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.28■□□□□ 0.84
COL18A1P39060 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL18A1P39060 ILF3-AS1-201ENST00000591501 1983 ntBASIC20.28■□□□□ 0.84
COL18A1P39060 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL18A1P39060 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC20.28■□□□□ 0.84
COL18A1P39060 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL18A1P39060 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL18A1P39060 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC20.28■□□□□ 0.84
COL18A1P39060 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL18A1P39060 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL18A1P39060 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL18A1P39060 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC20.28■□□□□ 0.84
COL18A1P39060 AC010141.1-201ENST00000411585 623 ntBASIC20.28■□□□□ 0.84
COL18A1P39060 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC20.28■□□□□ 0.84
COL18A1P39060 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC20.28■□□□□ 0.84
COL18A1P39060 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC20.28■□□□□ 0.84
COL18A1P39060 RN7SL555P-201ENST00000584742 339 ntBASIC20.28■□□□□ 0.84
COL18A1P39060 AC090164.2-201ENST00000611487 516 ntBASIC20.28■□□□□ 0.84
COL18A1P39060 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
COL18A1P39060 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.28■□□□□ 0.84
COL18A1P39060 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC20.28■□□□□ 0.84
COL18A1P39060 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL18A1P39060 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL18A1P39060 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC20.27■□□□□ 0.84
COL18A1P39060 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
COL18A1P39060 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC20.27■□□□□ 0.84
COL18A1P39060 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL18A1P39060 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL18A1P39060 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC20.27■□□□□ 0.84
COL18A1P39060 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL18A1P39060 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL18A1P39060 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
COL18A1P39060 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL18A1P39060 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL18A1P39060 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC20.27■□□□□ 0.84
COL18A1P39060 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC20.27■□□□□ 0.84
COL18A1P39060 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC20.27■□□□□ 0.84
COL18A1P39060 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC20.27■□□□□ 0.84
COL18A1P39060 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
COL18A1P39060 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL18A1P39060 EID1-202ENST00000560490 584 ntTSL 3 BASIC20.27■□□□□ 0.84
COL18A1P39060 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC20.27■□□□□ 0.84
COL18A1P39060 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC20.27■□□□□ 0.84
COL18A1P39060 AL162426.1-201ENST00000624141 743 ntBASIC20.27■□□□□ 0.84
COL18A1P39060 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
COL18A1P39060 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC20.27■□□□□ 0.84
COL18A1P39060 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
COL18A1P39060 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
COL18A1P39060 AC009090.5-201ENST00000624886 2285 ntBASIC20.27■□□□□ 0.83
COL18A1P39060 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL18A1P39060 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL18A1P39060 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL18A1P39060 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC20.26■□□□□ 0.83
COL18A1P39060 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL18A1P39060 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL18A1P39060 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC20.26■□□□□ 0.83
COL18A1P39060 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC20.26■□□□□ 0.83
COL18A1P39060 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC20.26■□□□□ 0.83
COL18A1P39060 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC20.26■□□□□ 0.83
COL18A1P39060 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL18A1P39060 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
COL18A1P39060 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL18A1P39060 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL18A1P39060 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL18A1P39060 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL18A1P39060 AC092364.2-201ENST00000596710 2692 ntBASIC20.26■□□□□ 0.83
COL18A1P39060 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
COL18A1P39060 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
COL18A1P39060 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC20.26■□□□□ 0.83
COL18A1P39060 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC20.26■□□□□ 0.83
COL18A1P39060 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
COL18A1P39060 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms