Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRCA1P38398 AC244394.1-201ENST00000435000 1665 ntBASIC18.65■□□□□ 0.58
BRCA1P38398 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
BRCA1P38398 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRCA1P38398 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BRCA1P38398 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRCA1P38398 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
BRCA1P38398 ALOX12P2-203ENST00000570921 1945 ntBASIC18.65■□□□□ 0.58
BRCA1P38398 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRCA1P38398 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRCA1P38398 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
BRCA1P38398 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC18.65■□□□□ 0.58
BRCA1P38398 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BRCA1P38398 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BRCA1P38398 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC18.65■□□□□ 0.58
BRCA1P38398 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC18.65■□□□□ 0.58
BRCA1P38398 AL031713.1-201ENST00000564813 661 ntBASIC18.65■□□□□ 0.58
BRCA1P38398 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC18.65■□□□□ 0.58
BRCA1P38398 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
BRCA1P38398 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
BRCA1P38398 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRCA1P38398 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
BRCA1P38398 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
BRCA1P38398 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC18.64■□□□□ 0.57
BRCA1P38398 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
BRCA1P38398 E2F3P2-201ENST00000447755 1422 ntBASIC18.64■□□□□ 0.57
BRCA1P38398 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
BRCA1P38398 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC18.64■□□□□ 0.57
BRCA1P38398 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
BRCA1P38398 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC18.64■□□□□ 0.57
BRCA1P38398 AC009093.2-202ENST00000620513 2079 ntBASIC18.64■□□□□ 0.57
BRCA1P38398 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
BRCA1P38398 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
BRCA1P38398 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
BRCA1P38398 AC079112.1-201ENST00000454972 939 ntBASIC18.64■□□□□ 0.57
BRCA1P38398 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC18.64■□□□□ 0.57
BRCA1P38398 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC18.64■□□□□ 0.57
BRCA1P38398 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC18.64■□□□□ 0.57
BRCA1P38398 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC18.64■□□□□ 0.57
BRCA1P38398 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC18.64■□□□□ 0.57
BRCA1P38398 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
BRCA1P38398 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC18.64■□□□□ 0.57
BRCA1P38398 AC025262.2-201ENST00000623975 1056 ntBASIC18.64■□□□□ 0.57
BRCA1P38398 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
BRCA1P38398 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
BRCA1P38398 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRCA1P38398 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
BRCA1P38398 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRCA1P38398 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
BRCA1P38398 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRCA1P38398 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
BRCA1P38398 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC18.63■□□□□ 0.57
BRCA1P38398 PAM16-211ENST00000575848 518 ntTSL 3 BASIC18.63■□□□□ 0.57
BRCA1P38398 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
BRCA1P38398 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC18.63■□□□□ 0.57
BRCA1P38398 AC073911.3-201ENST00000624401 631 ntBASIC18.63■□□□□ 0.57
BRCA1P38398 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
BRCA1P38398 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRCA1P38398 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC18.63■□□□□ 0.57
BRCA1P38398 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRCA1P38398 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRCA1P38398 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRCA1P38398 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
BRCA1P38398 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
BRCA1P38398 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC18.63■□□□□ 0.57
BRCA1P38398 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
BRCA1P38398 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRCA1P38398 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC18.63■□□□□ 0.57
BRCA1P38398 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.63■□□□□ 0.57
BRCA1P38398 AL512430.1-201ENST00000392575 860 ntBASIC18.63■□□□□ 0.57
BRCA1P38398 AL357563.1-201ENST00000404728 395 ntBASIC18.63■□□□□ 0.57
BRCA1P38398 KRT18P36-201ENST00000411618 1276 ntBASIC18.63■□□□□ 0.57
BRCA1P38398 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC18.63■□□□□ 0.57
BRCA1P38398 AC012362.1-201ENST00000434906 739 ntBASIC18.63■□□□□ 0.57
BRCA1P38398 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC18.63■□□□□ 0.57
BRCA1P38398 RPL7P35-201ENST00000446943 740 ntBASIC18.63■□□□□ 0.57
BRCA1P38398 RN7SL258P-201ENST00000478664 300 ntBASIC18.63■□□□□ 0.57
BRCA1P38398 TPM1-223ENST00000560445 485 ntTSL 3 BASIC18.63■□□□□ 0.57
BRCA1P38398 AL109837.1-201ENST00000603272 613 ntBASIC18.63■□□□□ 0.57
BRCA1P38398 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
BRCA1P38398 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
BRCA1P38398 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
BRCA1P38398 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.62■□□□□ 0.57
BRCA1P38398 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC18.62■□□□□ 0.57
BRCA1P38398 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC18.62■□□□□ 0.57
BRCA1P38398 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRCA1P38398 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRCA1P38398 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRCA1P38398 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRCA1P38398 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC18.62■□□□□ 0.57
BRCA1P38398 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
BRCA1P38398 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRCA1P38398 AL157792.1-201ENST00000488281 530 ntBASIC18.62■□□□□ 0.57
BRCA1P38398 NSD1-211ENST00000511258 809 ntTSL 3 BASIC18.62■□□□□ 0.57
BRCA1P38398 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC18.62■□□□□ 0.57
BRCA1P38398 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC18.62■□□□□ 0.57
BRCA1P38398 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
BRCA1P38398 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
BRCA1P38398 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
BRCA1P38398 AC084364.1-201ENST00000551967 1556 ntBASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms