Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC13.77□□□□□ -0.21
COL8A1P27658 AC116353.5-201ENST00000638148 1699 ntBASIC13.77□□□□□ -0.21
COL8A1P27658 HLA-C-210ENST00000640219 976 ntBASIC13.77□□□□□ -0.21
COL8A1P27658 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL8A1P27658 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
COL8A1P27658 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL8A1P27658 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
COL8A1P27658 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC13.77□□□□□ -0.21
COL8A1P27658 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL8A1P27658 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL8A1P27658 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL8A1P27658 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 F11R-206ENST00000621309 4770 ntTSL 5 BASIC13.76□□□□□ -0.21
COL8A1P27658 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
COL8A1P27658 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC13.76□□□□□ -0.21
COL8A1P27658 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC13.76□□□□□ -0.21
COL8A1P27658 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC13.76□□□□□ -0.21
COL8A1P27658 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 BANP-227ENST00000626016 2144 ntTSL 2 BASIC13.76□□□□□ -0.21
COL8A1P27658 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC13.76□□□□□ -0.21
COL8A1P27658 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
COL8A1P27658 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC13.76□□□□□ -0.21
COL8A1P27658 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC13.76□□□□□ -0.21
COL8A1P27658 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC13.76□□□□□ -0.21
COL8A1P27658 AL512652.2-201ENST00000625156 1716 ntBASIC13.76□□□□□ -0.21
COL8A1P27658 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC13.76□□□□□ -0.21
COL8A1P27658 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 GRN-214ENST00000589265 1632 ntTSL 5 BASIC13.76□□□□□ -0.21
COL8A1P27658 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
COL8A1P27658 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC13.76□□□□□ -0.21
COL8A1P27658 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
COL8A1P27658 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC13.76□□□□□ -0.21
COL8A1P27658 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC13.76□□□□□ -0.21
COL8A1P27658 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC13.76□□□□□ -0.21
COL8A1P27658 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC13.76□□□□□ -0.21
COL8A1P27658 PTPA-218ENST00000435132 618 ntTSL 2 BASIC13.76□□□□□ -0.21
COL8A1P27658 AC069218.1-201ENST00000435269 762 ntBASIC13.76□□□□□ -0.21
COL8A1P27658 MTND2P7-201ENST00000521337 640 ntBASIC13.76□□□□□ -0.21
COL8A1P27658 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC13.76□□□□□ -0.21
COL8A1P27658 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC13.76□□□□□ -0.21
COL8A1P27658 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC13.76□□□□□ -0.21
COL8A1P27658 AC025279.2-201ENST00000569730 653 ntBASIC13.76□□□□□ -0.21
COL8A1P27658 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC13.76□□□□□ -0.21
COL8A1P27658 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC13.76□□□□□ -0.21
COL8A1P27658 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC13.76□□□□□ -0.21
COL8A1P27658 AP001505.2-201ENST00000616815 443 ntBASIC13.76□□□□□ -0.21
COL8A1P27658 AL353726.2-201ENST00000623259 884 ntBASIC13.76□□□□□ -0.21
COL8A1P27658 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC13.76□□□□□ -0.21
COL8A1P27658 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC13.76□□□□□ -0.21
COL8A1P27658 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
COL8A1P27658 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
COL8A1P27658 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC13.76□□□□□ -0.21
COL8A1P27658 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC13.76□□□□□ -0.21
COL8A1P27658 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
COL8A1P27658 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
COL8A1P27658 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 AC092053.1-201ENST00000605787 1936 ntBASIC13.76□□□□□ -0.21
COL8A1P27658 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC13.76□□□□□ -0.21
COL8A1P27658 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
COL8A1P27658 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC13.76□□□□□ -0.21
COL8A1P27658 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL8A1P27658 NF2-208ENST00000403435 2568 ntTSL 5 BASIC13.76□□□□□ -0.21
COL8A1P27658 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC13.75□□□□□ -0.21
COL8A1P27658 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms