Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.22■□□□□ 0.19
HMGA1P17096 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
HMGA1P17096 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.21■□□□□ 0.19
HMGA1P17096 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.21■□□□□ 0.19
HMGA1P17096 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HMGA1P17096 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGA1P17096 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
HMGA1P17096 REXO1L6P-201ENST00000603433 1515 ntBASIC16.21■□□□□ 0.19
HMGA1P17096 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGA1P17096 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
HMGA1P17096 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
HMGA1P17096 MPV17-206ENST00000402722 827 ntTSL 3 BASIC16.21■□□□□ 0.19
HMGA1P17096 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC16.21■□□□□ 0.19
HMGA1P17096 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.21■□□□□ 0.19
HMGA1P17096 KRT90P-201ENST00000549264 1064 ntBASIC16.21■□□□□ 0.19
HMGA1P17096 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC16.21■□□□□ 0.19
HMGA1P17096 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC16.21■□□□□ 0.19
HMGA1P17096 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
HMGA1P17096 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC16.21■□□□□ 0.19
HMGA1P17096 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGA1P17096 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.21■□□□□ 0.19
HMGA1P17096 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGA1P17096 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGA1P17096 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HMGA1P17096 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
HMGA1P17096 AC127383.1-201ENST00000444697 1800 ntBASIC16.21■□□□□ 0.19
HMGA1P17096 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGA1P17096 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGA1P17096 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGA1P17096 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGA1P17096 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
HMGA1P17096 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
HMGA1P17096 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
HMGA1P17096 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
HMGA1P17096 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGA1P17096 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.2■□□□□ 0.18
HMGA1P17096 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HMGA1P17096 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC16.2■□□□□ 0.18
HMGA1P17096 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
HMGA1P17096 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGA1P17096 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGA1P17096 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.2■□□□□ 0.18
HMGA1P17096 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGA1P17096 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGA1P17096 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGA1P17096 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGA1P17096 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGA1P17096 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC16.2■□□□□ 0.18
HMGA1P17096 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC16.2■□□□□ 0.18
HMGA1P17096 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HMGA1P17096 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC16.2■□□□□ 0.18
HMGA1P17096 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HMGA1P17096 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC16.2■□□□□ 0.18
HMGA1P17096 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC16.2■□□□□ 0.18
HMGA1P17096 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC16.2■□□□□ 0.18
HMGA1P17096 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC16.2■□□□□ 0.18
HMGA1P17096 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.2■□□□□ 0.18
HMGA1P17096 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC16.2■□□□□ 0.18
HMGA1P17096 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
HMGA1P17096 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC16.2■□□□□ 0.18
HMGA1P17096 BX539320.1-201ENST00000623759 877 ntBASIC16.2■□□□□ 0.18
HMGA1P17096 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGA1P17096 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
HMGA1P17096 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.2■□□□□ 0.18
HMGA1P17096 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
HMGA1P17096 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGA1P17096 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGA1P17096 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC16.2■□□□□ 0.18
HMGA1P17096 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGA1P17096 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
HMGA1P17096 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGA1P17096 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGA1P17096 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGA1P17096 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGA1P17096 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HMGA1P17096 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGA1P17096 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGA1P17096 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.19■□□□□ 0.18
HMGA1P17096 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.19■□□□□ 0.18
HMGA1P17096 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGA1P17096 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
HMGA1P17096 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGA1P17096 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGA1P17096 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGA1P17096 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGA1P17096 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HMGA1P17096 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGA1P17096 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.19■□□□□ 0.18
HMGA1P17096 AC084364.1-201ENST00000551967 1556 ntBASIC16.19■□□□□ 0.18
HMGA1P17096 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HMGA1P17096 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGA1P17096 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGA1P17096 ZBTB12BP-201ENST00000314232 1122 ntBASIC16.19■□□□□ 0.18
HMGA1P17096 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
HMGA1P17096 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HMGA1P17096 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
HMGA1P17096 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC16.19■□□□□ 0.18
HMGA1P17096 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGA1P17096 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
HMGA1P17096 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms