Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC15.36■□□□□ 0.05
TNFP01375 PTP4A1P2-201ENST00000546033 454 ntBASIC15.36■□□□□ 0.05
TNFP01375 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC15.36■□□□□ 0.05
TNFP01375 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC15.36■□□□□ 0.05
TNFP01375 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC15.36■□□□□ 0.05
TNFP01375 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC15.36■□□□□ 0.05
TNFP01375 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC15.36■□□□□ 0.05
TNFP01375 AC233724.13-201ENST00000598383 410 ntBASIC15.36■□□□□ 0.05
TNFP01375 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TNFP01375 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
TNFP01375 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.36■□□□□ 0.05
TNFP01375 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TNFP01375 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TNFP01375 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
TNFP01375 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC15.36■□□□□ 0.05
TNFP01375 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TNFP01375 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC15.36■□□□□ 0.05
TNFP01375 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC15.36■□□□□ 0.05
TNFP01375 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.36■□□□□ 0.05
TNFP01375 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.35■□□□□ 0.05
TNFP01375 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC15.35■□□□□ 0.05
TNFP01375 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC15.35■□□□□ 0.05
TNFP01375 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.35■□□□□ 0.05
TNFP01375 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
TNFP01375 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
TNFP01375 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.35■□□□□ 0.05
TNFP01375 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC15.35■□□□□ 0.05
TNFP01375 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.35■□□□□ 0.05
TNFP01375 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC15.35■□□□□ 0.05
TNFP01375 MIR658-201ENST00000385210 100 ntBASIC15.35■□□□□ 0.05
TNFP01375 BOLA2P3-201ENST00000404566 256 ntBASIC15.35■□□□□ 0.05
TNFP01375 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC15.35■□□□□ 0.05
TNFP01375 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
TNFP01375 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC15.35■□□□□ 0.05
TNFP01375 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC15.35■□□□□ 0.05
TNFP01375 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC15.35■□□□□ 0.05
TNFP01375 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC15.35■□□□□ 0.05
TNFP01375 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC15.35■□□□□ 0.05
TNFP01375 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
TNFP01375 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
TNFP01375 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC15.35■□□□□ 0.05
TNFP01375 AC015910.1-201ENST00000579400 975 ntBASIC15.35■□□□□ 0.05
TNFP01375 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC15.35■□□□□ 0.05
TNFP01375 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC15.35■□□□□ 0.05
TNFP01375 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
TNFP01375 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC15.35■□□□□ 0.05
TNFP01375 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC15.35■□□□□ 0.05
TNFP01375 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
TNFP01375 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.35■□□□□ 0.05
TNFP01375 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC15.35■□□□□ 0.05
TNFP01375 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.35■□□□□ 0.05
TNFP01375 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
TNFP01375 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC15.35■□□□□ 0.05
TNFP01375 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
TNFP01375 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 TP73-209ENST00000603362 1668 ntTSL 5 BASIC15.35■□□□□ 0.05
TNFP01375 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TNFP01375 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.34■□□□□ 0.05
TNFP01375 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.34■□□□□ 0.05
TNFP01375 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
TNFP01375 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
TNFP01375 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC15.34■□□□□ 0.05
TNFP01375 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
TNFP01375 FRMD6-AS1-201ENST00000617151 2229 ntBASIC15.34■□□□□ 0.05
TNFP01375 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 MIR1909-201ENST00000411312 80 ntBASIC15.34■□□□□ 0.05
TNFP01375 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TNFP01375 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC15.34■□□□□ 0.05
TNFP01375 AC022210.1-201ENST00000449856 793 ntBASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms