Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
VPS4BO75351 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.56■□□□□ 0.08
VPS4BO75351 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VPS4BO75351 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS4BO75351 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS4BO75351 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
VPS4BO75351 TNRC18P2-201ENST00000417666 2714 ntBASIC15.55■□□□□ 0.08
VPS4BO75351 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.55■□□□□ 0.08
VPS4BO75351 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.55■□□□□ 0.08
VPS4BO75351 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS4BO75351 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VPS4BO75351 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VPS4BO75351 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
VPS4BO75351 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
VPS4BO75351 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VPS4BO75351 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VPS4BO75351 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.55■□□□□ 0.08
VPS4BO75351 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC15.55■□□□□ 0.08
VPS4BO75351 WASH6P-202ENST00000359512 1437 ntBASIC15.55■□□□□ 0.08
VPS4BO75351 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.55■□□□□ 0.08
VPS4BO75351 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.55■□□□□ 0.08
VPS4BO75351 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS4BO75351 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.55■□□□□ 0.08
VPS4BO75351 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.55■□□□□ 0.08
VPS4BO75351 FALEC-201ENST00000416894 566 ntTSL 3 BASIC15.55■□□□□ 0.08
VPS4BO75351 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VPS4BO75351 KLF2P3-201ENST00000451977 1087 ntBASIC15.55■□□□□ 0.08
VPS4BO75351 AL512638.1-201ENST00000457493 794 ntBASIC15.55■□□□□ 0.08
VPS4BO75351 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC15.55■□□□□ 0.08
VPS4BO75351 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
VPS4BO75351 RN7SL204P-201ENST00000582831 262 ntBASIC15.55■□□□□ 0.08
VPS4BO75351 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS4BO75351 CECR7-204ENST00000609932 568 ntTSL 2 BASIC15.55■□□□□ 0.08
VPS4BO75351 AL008721.1-201ENST00000609964 604 ntBASIC15.55■□□□□ 0.08
VPS4BO75351 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VPS4BO75351 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.55■□□□□ 0.08
VPS4BO75351 AL358472.5-202ENST00000641448 1267 ntBASIC15.55■□□□□ 0.08
VPS4BO75351 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS4BO75351 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
VPS4BO75351 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
VPS4BO75351 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
VPS4BO75351 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
VPS4BO75351 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS4BO75351 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.55■□□□□ 0.08
VPS4BO75351 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
VPS4BO75351 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS4BO75351 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.55■□□□□ 0.08
VPS4BO75351 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VPS4BO75351 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
VPS4BO75351 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
VPS4BO75351 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VPS4BO75351 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS4BO75351 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.55■□□□□ 0.08
VPS4BO75351 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
VPS4BO75351 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.55■□□□□ 0.08
VPS4BO75351 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VPS4BO75351 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.55■□□□□ 0.08
VPS4BO75351 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VPS4BO75351 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS4BO75351 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
VPS4BO75351 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VPS4BO75351 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.54■□□□□ 0.08
VPS4BO75351 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.54■□□□□ 0.08
VPS4BO75351 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS4BO75351 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.54■□□□□ 0.08
VPS4BO75351 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.54■□□□□ 0.08
VPS4BO75351 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VPS4BO75351 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.54■□□□□ 0.08
VPS4BO75351 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.54■□□□□ 0.08
VPS4BO75351 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS4BO75351 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC15.54■□□□□ 0.08
VPS4BO75351 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VPS4BO75351 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
VPS4BO75351 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS4BO75351 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS4BO75351 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
VPS4BO75351 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS4BO75351 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VPS4BO75351 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VPS4BO75351 KRT18P32-201ENST00000424695 1287 ntBASIC15.54■□□□□ 0.08
VPS4BO75351 AC140658.5-201ENST00000438532 169 ntBASIC15.54■□□□□ 0.08
VPS4BO75351 AL592309.1-201ENST00000443127 649 ntBASIC15.54■□□□□ 0.08
VPS4BO75351 FAM207CP-201ENST00000443486 507 ntBASIC15.54■□□□□ 0.08
VPS4BO75351 AC069335.1-201ENST00000489972 472 ntBASIC15.54■□□□□ 0.08
VPS4BO75351 IGHV3-42-201ENST00000520410 361 ntBASIC15.54■□□□□ 0.08
VPS4BO75351 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC15.54■□□□□ 0.08
VPS4BO75351 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VPS4BO75351 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.54■□□□□ 0.08
VPS4BO75351 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.54■□□□□ 0.08
VPS4BO75351 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC15.54■□□□□ 0.08
VPS4BO75351 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS4BO75351 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VPS4BO75351 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS4BO75351 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.54■□□□□ 0.08
VPS4BO75351 AC090616.6-203ENST00000579186 1945 ntBASIC15.54■□□□□ 0.08
VPS4BO75351 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
VPS4BO75351 AC007326.2-201ENST00000624224 7579 ntBASIC15.54■□□□□ 0.08
VPS4BO75351 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms