Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 KRT18P64-201ENST00000434946 1219 ntBASIC19.77■□□□□ 0.76
CHMP3Q9Y3E7 FADS2-205ENST00000517839 469 ntTSL 3 BASIC19.77■□□□□ 0.76
CHMP3Q9Y3E7 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC19.77■□□□□ 0.76
CHMP3Q9Y3E7 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
CHMP3Q9Y3E7 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC19.77■□□□□ 0.76
CHMP3Q9Y3E7 AC093726.1-201ENST00000608064 963 ntBASIC19.77■□□□□ 0.76
CHMP3Q9Y3E7 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
CHMP3Q9Y3E7 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP3Q9Y3E7 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP3Q9Y3E7 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP3Q9Y3E7 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP3Q9Y3E7 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP3Q9Y3E7 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC19.77■□□□□ 0.76
CHMP3Q9Y3E7 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC19.77■□□□□ 0.76
CHMP3Q9Y3E7 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP3Q9Y3E7 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC19.77■□□□□ 0.75
CHMP3Q9Y3E7 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC19.77■□□□□ 0.75
CHMP3Q9Y3E7 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
CHMP3Q9Y3E7 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 LRRFIP1P1-201ENST00000498774 2246 ntBASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 RPL13P2-201ENST00000440687 659 ntBASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 INE1-201ENST00000456273 945 ntBASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 POLE2-203ENST00000553805 496 ntTSL 2 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 HNRNPUP1-201ENST00000554987 333 ntBASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 CTBP2P3-201ENST00000585629 1255 ntBASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 MIR8072-201ENST00000614241 80 ntBASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 FRMD6-AS1-201ENST00000617151 2229 ntBASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CHMP3Q9Y3E7 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 ELK1P1-201ENST00000485699 580 ntBASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 CR383656.12-201ENST00000549567 513 ntBASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 RARRES2P5-201ENST00000564013 466 ntBASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 AC068587.6-202ENST00000641839 5619 ntBASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP3Q9Y3E7 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC19.74■□□□□ 0.75
CHMP3Q9Y3E7 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms