Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 AL691432.1-201ENST00000596308 1422 ntBASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 AL139384.1-201ENST00000612143 3047 ntBASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 INTS4P2-202ENST00000614726 2019 ntBASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 AC004987.2-201ENST00000395959 1148 ntBASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 KRT8P13-201ENST00000463294 1010 ntBASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 RHOQP1-201ENST00000555758 579 ntBASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 AC009486.1-201ENST00000569860 813 ntBASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 AC124283.3-201ENST00000570869 594 ntBASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 AC244669.2-201ENST00000612320 853 ntBASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 AC046158.3-201ENST00000624947 2558 ntBASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 MSTO2P-201ENST00000314835 1709 ntBASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 AGER-203ENST00000375065 665 ntTSL 2 BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 C1QBPP1-201ENST00000400117 770 ntBASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 MPV17-206ENST00000402722 827 ntTSL 3 BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 AC074338.1-201ENST00000416825 156 ntBASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 TARDBPP1-201ENST00000442013 1203 ntBASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 RPL13AP25-201ENST00000484130 612 ntBASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 CLUHP6-201ENST00000580789 941 ntBASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 PPA1-206ENST00000625364 644 ntTSL 5 BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.46■□□□□ 0.23
LIMD1Q9UGP4 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
LIMD1Q9UGP4 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.46■□□□□ 0.22
LIMD1Q9UGP4 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
LIMD1Q9UGP4 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIMD1Q9UGP4 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIMD1Q9UGP4 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIMD1Q9UGP4 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LIMD1Q9UGP4 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIMD1Q9UGP4 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms