Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LHX3Q9UBR4 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 GALT-202ENST00000450095 1280 ntTSL 2 BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 AC092552.1-201ENST00000547243 906 ntBASIC15.82■□□□□ 0.12
LHX3Q9UBR4 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 BRI3BPP1-201ENST00000594224 787 ntBASIC15.82■□□□□ 0.12
LHX3Q9UBR4 AC105233.6-201ENST00000642093 218 ntBASIC15.82■□□□□ 0.12
LHX3Q9UBR4 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 AC090616.6-203ENST00000579186 1945 ntBASIC15.82■□□□□ 0.12
LHX3Q9UBR4 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LHX3Q9UBR4 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 AC104596.2-201ENST00000512793 793 ntBASIC15.81■□□□□ 0.12
LHX3Q9UBR4 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 AC084364.1-201ENST00000551967 1556 ntBASIC15.81■□□□□ 0.12
LHX3Q9UBR4 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 TMEM261P1-201ENST00000604899 340 ntBASIC15.81■□□□□ 0.12
LHX3Q9UBR4 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 AC020658.6-201ENST00000623564 1870 ntBASIC15.81■□□□□ 0.12
LHX3Q9UBR4 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LHX3Q9UBR4 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC15.8■□□□□ 0.12
LHX3Q9UBR4 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LHX3Q9UBR4 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC15.8■□□□□ 0.12
LHX3Q9UBR4 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
LHX3Q9UBR4 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.8■□□□□ 0.12
LHX3Q9UBR4 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LHX3Q9UBR4 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
LHX3Q9UBR4 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LHX3Q9UBR4 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.8■□□□□ 0.12
LHX3Q9UBR4 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LHX3Q9UBR4 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.8■□□□□ 0.12
LHX3Q9UBR4 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LHX3Q9UBR4 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LHX3Q9UBR4 AMT-232ENST00000636199 1546 ntTSL 5 BASIC15.8■□□□□ 0.12
LHX3Q9UBR4 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
LHX3Q9UBR4 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.8■□□□□ 0.12
LHX3Q9UBR4 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LHX3Q9UBR4 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms