Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 AC018529.1-201ENST00000613063 361 ntBASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 CCDC74BP1-201ENST00000508880 1123 ntBASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
TRIM54Q9BYV2 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 AC023157.3-201ENST00000619086 2088 ntBASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 SNHG9-202ENST00000564014 471 ntBASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 AC003101.2-201ENST00000612557 442 ntBASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 REXO1L1P-202ENST00000608646 1974 ntBASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.65■□□□□ 0.1
TRIM54Q9BYV2 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
TRIM54Q9BYV2 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
TRIM54Q9BYV2 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.1
TRIM54Q9BYV2 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM54Q9BYV2 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM54Q9BYV2 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM54Q9BYV2 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM54Q9BYV2 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
TRIM54Q9BYV2 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
TRIM54Q9BYV2 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM54Q9BYV2 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM54Q9BYV2 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM54Q9BYV2 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
TRIM54Q9BYV2 KRT18P13-201ENST00000400056 1290 ntBASIC15.64■□□□□ 0.09
TRIM54Q9BYV2 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.64■□□□□ 0.09
TRIM54Q9BYV2 FAM58DP-201ENST00000428076 619 ntBASIC15.64■□□□□ 0.09
TRIM54Q9BYV2 AL136982.4-201ENST00000437689 1740 ntBASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms