Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
HDDC3Q8N4P3 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
HDDC3Q8N4P3 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.83■□□□□ 0.13
HDDC3Q8N4P3 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
HDDC3Q8N4P3 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.83■□□□□ 0.13
HDDC3Q8N4P3 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC15.83■□□□□ 0.13
HDDC3Q8N4P3 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC15.83■□□□□ 0.13
HDDC3Q8N4P3 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 LBX2-201ENST00000341396 886 ntTSL 3 BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 BCYRN1-201ENST00000418539 200 ntBASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 KLF2P4-201ENST00000451959 1225 ntBASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 AC233724.13-201ENST00000598383 410 ntBASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 GPR182-203ENST00000622922 591 ntBASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 AL596087.1-201ENST00000400979 1969 ntBASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 AC018665.1-201ENST00000622927 1362 ntBASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 KRT8P22-201ENST00000562317 1415 ntBASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HDDC3Q8N4P3 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 CU634019.7-201ENST00000624153 1185 ntBASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 FP236241.2-201ENST00000624906 1185 ntBASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HDDC3Q8N4P3 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
HDDC3Q8N4P3 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms