Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 LRRC59-203ENST00000576448 1531 ntBASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 AC092171.3-201ENST00000610122 2651 ntBASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 SNX21-203ENST00000372541 771 ntTSL 2 BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 B9D1-203ENST00000395615 805 ntTSL 3 BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 PARP8-206ENST00000503665 572 ntTSL 4 BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 AC025181.2-201ENST00000606994 802 ntBASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 AC244157.2-201ENST00000616239 1006 ntBASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 ENPP7P14-201ENST00000621765 1040 ntBASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 AC138627.1-207ENST00000641560 1006 ntBASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CNKSR3Q6P9H4 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
CNKSR3Q6P9H4 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
CNKSR3Q6P9H4 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CNKSR3Q6P9H4 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CNKSR3Q6P9H4 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.77■□□□□ 0.27
CNKSR3Q6P9H4 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.77■□□□□ 0.27
CNKSR3Q6P9H4 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CNKSR3Q6P9H4 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
CNKSR3Q6P9H4 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
CNKSR3Q6P9H4 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.76■□□□□ 0.27
CNKSR3Q6P9H4 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.76■□□□□ 0.27
CNKSR3Q6P9H4 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms