Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 BX842568.4-201ENST00000421222 227 ntBASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 AL390755.1-201ENST00000623716 2027 ntBASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 KRT18P13-201ENST00000400056 1290 ntBASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 AL513480.1-201ENST00000451731 511 ntBASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 AC040169.1-201ENST00000565382 521 ntBASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 AC010507.1-201ENST00000633895 436 ntBASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.24■□□□□ 0.03
PPP4R4Q6NUP7 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 AC232323.1-201ENST00000540724 2099 ntBASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 REXO1L5P-201ENST00000622260 2098 ntBASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 KRT18P2-201ENST00000447938 1258 ntBASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 SLC25A6P2-201ENST00000497974 877 ntBASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 CXCL1P1-201ENST00000502804 216 ntBASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 AC002347.1-201ENST00000569543 541 ntBASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 AC020765.3-201ENST00000613051 740 ntBASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 AC104581.4-201ENST00000623126 3052 ntBASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 AC013726.1-201ENST00000563747 2285 ntBASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms