Protein–RNA interactions for Protein: Q08945

SSRP1, FACT complex subunit SSRP1, humanhuman

Known RBP Predictions only

Length 709 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSRP1Q08945 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SSRP1Q08945 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC18.33■□□□□ 0.52
SSRP1Q08945 AC010336.2-201ENST00000564226 506 ntBASIC18.33■□□□□ 0.52
SSRP1Q08945 AC025048.3-201ENST00000590609 569 ntBASIC18.33■□□□□ 0.52
SSRP1Q08945 AC005702.4-201ENST00000618393 416 ntBASIC18.33■□□□□ 0.52
SSRP1Q08945 AL590560.3-201ENST00000623350 461 ntBASIC18.33■□□□□ 0.52
SSRP1Q08945 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SSRP1Q08945 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SSRP1Q08945 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
SSRP1Q08945 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SSRP1Q08945 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SSRP1Q08945 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC18.33■□□□□ 0.52
SSRP1Q08945 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SSRP1Q08945 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SSRP1Q08945 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SSRP1Q08945 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SSRP1Q08945 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SSRP1Q08945 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SSRP1Q08945 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
SSRP1Q08945 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
SSRP1Q08945 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSRP1Q08945 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC18.32■□□□□ 0.52
SSRP1Q08945 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC18.32■□□□□ 0.52
SSRP1Q08945 AC100757.3-201ENST00000622361 1406 ntBASIC18.32■□□□□ 0.52
SSRP1Q08945 TMBIM7P-203ENST00000641617 1718 ntBASIC18.32■□□□□ 0.52
SSRP1Q08945 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC18.32■□□□□ 0.52
SSRP1Q08945 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC18.32■□□□□ 0.52
SSRP1Q08945 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
SSRP1Q08945 AC087499.5-201ENST00000452760 1342 ntBASIC18.32■□□□□ 0.52
SSRP1Q08945 Z97205.2-201ENST00000564697 1639 ntBASIC18.32■□□□□ 0.52
SSRP1Q08945 AMT-233ENST00000636522 1620 ntTSL 2 BASIC18.32■□□□□ 0.52
SSRP1Q08945 AC092384.3-202ENST00000564646 2873 ntBASIC18.32■□□□□ 0.52
SSRP1Q08945 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SSRP1Q08945 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SSRP1Q08945 PNMT-202ENST00000394246 821 ntTSL 2 BASIC18.32■□□□□ 0.52
SSRP1Q08945 HNRNPA3P1-201ENST00000401429 1139 ntBASIC18.32■□□□□ 0.52
SSRP1Q08945 HNRNPA3P5-201ENST00000455201 833 ntBASIC18.32■□□□□ 0.52
SSRP1Q08945 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC18.32■□□□□ 0.52
SSRP1Q08945 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SSRP1Q08945 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSRP1Q08945 AC106028.4-201ENST00000614509 607 ntBASIC18.32■□□□□ 0.52
SSRP1Q08945 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC18.32■□□□□ 0.52
SSRP1Q08945 AC093512.1-201ENST00000617969 520 ntBASIC18.32■□□□□ 0.52
SSRP1Q08945 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
SSRP1Q08945 RAB34-223ENST00000636154 730 ntTSL 2 BASIC18.32■□□□□ 0.52
SSRP1Q08945 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSRP1Q08945 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSRP1Q08945 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSRP1Q08945 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSRP1Q08945 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSRP1Q08945 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSRP1Q08945 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC18.32■□□□□ 0.52
SSRP1Q08945 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC18.32■□□□□ 0.52
SSRP1Q08945 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC18.32■□□□□ 0.52
SSRP1Q08945 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSRP1Q08945 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSRP1Q08945 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSRP1Q08945 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SSRP1Q08945 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSRP1Q08945 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSRP1Q08945 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC18.31■□□□□ 0.52
SSRP1Q08945 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SSRP1Q08945 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSRP1Q08945 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SSRP1Q08945 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC18.31■□□□□ 0.52
SSRP1Q08945 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SSRP1Q08945 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSRP1Q08945 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC18.31■□□□□ 0.52
SSRP1Q08945 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SSRP1Q08945 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC18.31■□□□□ 0.52
SSRP1Q08945 AC073347.1-201ENST00000421633 2643 ntBASIC18.31■□□□□ 0.52
SSRP1Q08945 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
SSRP1Q08945 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSRP1Q08945 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSRP1Q08945 GGCT-205ENST00000409436 954 ntTSL 3 BASIC18.31■□□□□ 0.52
SSRP1Q08945 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC18.31■□□□□ 0.52
SSRP1Q08945 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC18.31■□□□□ 0.52
SSRP1Q08945 AC074338.1-201ENST00000416825 156 ntBASIC18.31■□□□□ 0.52
SSRP1Q08945 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSRP1Q08945 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC18.31■□□□□ 0.52
SSRP1Q08945 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC18.31■□□□□ 0.52
SSRP1Q08945 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC18.31■□□□□ 0.52
SSRP1Q08945 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC18.31■□□□□ 0.52
SSRP1Q08945 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SSRP1Q08945 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC18.31■□□□□ 0.52
SSRP1Q08945 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC18.31■□□□□ 0.52
SSRP1Q08945 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SSRP1Q08945 AC022532.1-201ENST00000624563 1728 ntBASIC18.31■□□□□ 0.52
SSRP1Q08945 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSRP1Q08945 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SSRP1Q08945 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
SSRP1Q08945 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSRP1Q08945 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC18.31■□□□□ 0.52
SSRP1Q08945 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC18.31■□□□□ 0.52
SSRP1Q08945 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SSRP1Q08945 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSRP1Q08945 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
SSRP1Q08945 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
SSRP1Q08945 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SSRP1Q08945 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms