Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC004554.1-201ENST00000422830 1468 ntBASIC11.07□□□□□ -0.64
PRKDCP78527 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
PRKDCP78527 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
PRKDCP78527 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC11.07□□□□□ -0.64
PRKDCP78527 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC11.07□□□□□ -0.64
PRKDCP78527 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC11.07□□□□□ -0.64
PRKDCP78527 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC11.07□□□□□ -0.64
PRKDCP78527 KLF2P1-201ENST00000447438 1042 ntBASIC11.07□□□□□ -0.64
PRKDCP78527 IGKV1OR-2-201ENST00000457995 350 ntBASIC11.07□□□□□ -0.64
PRKDCP78527 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC11.07□□□□□ -0.64
PRKDCP78527 PGAM1P12-201ENST00000505622 748 ntBASIC11.07□□□□□ -0.64
PRKDCP78527 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC11.07□□□□□ -0.64
PRKDCP78527 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC11.07□□□□□ -0.64
PRKDCP78527 HCG18-241ENST00000602290 821 ntTSL 2 BASIC11.07□□□□□ -0.64
PRKDCP78527 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC11.07□□□□□ -0.64
PRKDCP78527 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC11.07□□□□□ -0.64
PRKDCP78527 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
PRKDCP78527 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC11.07□□□□□ -0.64
PRKDCP78527 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC11.07□□□□□ -0.64
PRKDCP78527 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
PRKDCP78527 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
PRKDCP78527 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC11.07□□□□□ -0.64
PRKDCP78527 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC11.07□□□□□ -0.64
PRKDCP78527 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
PRKDCP78527 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
PRKDCP78527 AL158070.2-201ENST00000623713 1621 ntBASIC11.07□□□□□ -0.64
PRKDCP78527 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
PRKDCP78527 KRT17P5-201ENST00000332088 839 ntBASIC11.07□□□□□ -0.64
PRKDCP78527 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
PRKDCP78527 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
PRKDCP78527 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC11.07□□□□□ -0.64
PRKDCP78527 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC11.07□□□□□ -0.64
PRKDCP78527 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
PRKDCP78527 AC106047.2-201ENST00000511723 743 ntBASIC11.07□□□□□ -0.64
PRKDCP78527 MIR6125-201ENST00000618986 96 ntBASIC11.07□□□□□ -0.64
PRKDCP78527 Z98259.2-201ENST00000641583 609 ntBASIC11.07□□□□□ -0.64
PRKDCP78527 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC11.07□□□□□ -0.64
PRKDCP78527 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
PRKDCP78527 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
PRKDCP78527 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC11.06□□□□□ -0.64
PRKDCP78527 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
PRKDCP78527 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC11.06□□□□□ -0.64
PRKDCP78527 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
PRKDCP78527 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
PRKDCP78527 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
PRKDCP78527 AC090502.4-201ENST00000551714 1386 ntBASIC11.06□□□□□ -0.64
PRKDCP78527 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC11.06□□□□□ -0.64
PRKDCP78527 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC11.06□□□□□ -0.64
PRKDCP78527 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
PRKDCP78527 AC011840.2-201ENST00000563063 1520 ntBASIC11.06□□□□□ -0.64
PRKDCP78527 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
PRKDCP78527 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC11.06□□□□□ -0.64
PRKDCP78527 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
PRKDCP78527 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC11.06□□□□□ -0.64
PRKDCP78527 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
PRKDCP78527 B9D1-203ENST00000395615 805 ntTSL 3 BASIC11.06□□□□□ -0.64
PRKDCP78527 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC11.06□□□□□ -0.64
PRKDCP78527 NUDT4P2-201ENST00000578341 546 ntBASIC11.06□□□□□ -0.64
PRKDCP78527 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC11.06□□□□□ -0.64
PRKDCP78527 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC11.06□□□□□ -0.64
PRKDCP78527 AL353622.2-201ENST00000605846 425 ntBASIC11.06□□□□□ -0.64
PRKDCP78527 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC11.06□□□□□ -0.64
PRKDCP78527 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
PRKDCP78527 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC11.06□□□□□ -0.64
PRKDCP78527 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
PRKDCP78527 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
PRKDCP78527 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
PRKDCP78527 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC11.06□□□□□ -0.64
PRKDCP78527 AC134043.2-201ENST00000624206 2238 ntBASIC11.06□□□□□ -0.64
PRKDCP78527 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC11.06□□□□□ -0.64
PRKDCP78527 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
PRKDCP78527 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
PRKDCP78527 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC11.06□□□□□ -0.64
PRKDCP78527 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
PRKDCP78527 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
PRKDCP78527 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
PRKDCP78527 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
PRKDCP78527 STK16-203ENST00000409516 895 ntTSL 2 BASIC11.06□□□□□ -0.64
PRKDCP78527 AC114812.1-204ENST00000449669 728 ntBASIC11.06□□□□□ -0.64
PRKDCP78527 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
PRKDCP78527 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC11.06□□□□□ -0.64
PRKDCP78527 AC004466.1-201ENST00000599515 1080 ntBASIC11.06□□□□□ -0.64
PRKDCP78527 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
PRKDCP78527 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC11.06□□□□□ -0.64
PRKDCP78527 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
PRKDCP78527 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
PRKDCP78527 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
PRKDCP78527 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
PRKDCP78527 AL139094.1-201ENST00000405549 1188 ntBASIC11.06□□□□□ -0.64
PRKDCP78527 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
PRKDCP78527 AL451007.2-201ENST00000632004 563 ntBASIC11.06□□□□□ -0.64
PRKDCP78527 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
PRKDCP78527 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC11.06□□□□□ -0.64
PRKDCP78527 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
PRKDCP78527 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC11.06□□□□□ -0.64
PRKDCP78527 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC11.06□□□□□ -0.64
PRKDCP78527 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
PRKDCP78527 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
PRKDCP78527 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
PRKDCP78527 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms