Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.58■□□□□ 0.08
PKNOX1P55347 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
PKNOX1P55347 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PKNOX1P55347 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PKNOX1P55347 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
PKNOX1P55347 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PKNOX1P55347 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PKNOX1P55347 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PKNOX1P55347 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PKNOX1P55347 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
PKNOX1P55347 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC15.57■□□□□ 0.08
PKNOX1P55347 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PKNOX1P55347 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.57■□□□□ 0.08
PKNOX1P55347 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
PKNOX1P55347 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
PKNOX1P55347 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
PKNOX1P55347 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PKNOX1P55347 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PKNOX1P55347 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC15.57■□□□□ 0.08
PKNOX1P55347 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.57■□□□□ 0.08
PKNOX1P55347 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PKNOX1P55347 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PKNOX1P55347 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PKNOX1P55347 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.57■□□□□ 0.08
PKNOX1P55347 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
PKNOX1P55347 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PKNOX1P55347 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.57■□□□□ 0.08
PKNOX1P55347 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.57■□□□□ 0.08
PKNOX1P55347 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.57■□□□□ 0.08
PKNOX1P55347 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC15.57■□□□□ 0.08
PKNOX1P55347 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC15.57■□□□□ 0.08
PKNOX1P55347 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
PKNOX1P55347 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.57■□□□□ 0.08
PKNOX1P55347 FAM86C2P-203ENST00000528684 1004 ntBASIC15.57■□□□□ 0.08
PKNOX1P55347 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.57■□□□□ 0.08
PKNOX1P55347 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
PKNOX1P55347 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PKNOX1P55347 AC027601.4-201ENST00000611259 610 ntBASIC15.57■□□□□ 0.08
PKNOX1P55347 AC008267.7-201ENST00000624570 1194 ntBASIC15.57■□□□□ 0.08
PKNOX1P55347 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC15.57■□□□□ 0.08
PKNOX1P55347 CAND2-206ENST00000626378 333 ntTSL 5 BASIC15.57■□□□□ 0.08
PKNOX1P55347 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PKNOX1P55347 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.57■□□□□ 0.08
PKNOX1P55347 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.57■□□□□ 0.08
PKNOX1P55347 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.57■□□□□ 0.08
PKNOX1P55347 AC007686.3-201ENST00000619017 3487 ntBASIC15.57■□□□□ 0.08
PKNOX1P55347 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.57■□□□□ 0.08
PKNOX1P55347 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.57■□□□□ 0.08
PKNOX1P55347 FOXO1B-201ENST00000504678 1527 ntBASIC15.57■□□□□ 0.08
PKNOX1P55347 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PKNOX1P55347 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
PKNOX1P55347 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PKNOX1P55347 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PKNOX1P55347 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
PKNOX1P55347 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PKNOX1P55347 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
PKNOX1P55347 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PKNOX1P55347 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.56■□□□□ 0.08
PKNOX1P55347 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PKNOX1P55347 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PKNOX1P55347 GOLGA8DP-202ENST00000341390 2184 ntBASIC15.56■□□□□ 0.08
PKNOX1P55347 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.56■□□□□ 0.08
PKNOX1P55347 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PKNOX1P55347 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PKNOX1P55347 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.56■□□□□ 0.08
PKNOX1P55347 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PKNOX1P55347 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC15.56■□□□□ 0.08
PKNOX1P55347 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PKNOX1P55347 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PKNOX1P55347 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PKNOX1P55347 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.56■□□□□ 0.08
PKNOX1P55347 AL590627.1-203ENST00000421194 1026 ntBASIC15.56■□□□□ 0.08
PKNOX1P55347 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.56■□□□□ 0.08
PKNOX1P55347 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.56■□□□□ 0.08
PKNOX1P55347 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC15.56■□□□□ 0.08
PKNOX1P55347 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.56■□□□□ 0.08
PKNOX1P55347 AC027307.2-201ENST00000591252 911 ntBASIC15.56■□□□□ 0.08
PKNOX1P55347 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.56■□□□□ 0.08
PKNOX1P55347 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.56■□□□□ 0.08
PKNOX1P55347 FAM197Y3-203ENST00000618346 717 ntBASIC15.56■□□□□ 0.08
PKNOX1P55347 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.56■□□□□ 0.08
PKNOX1P55347 AC092865.6-201ENST00000642101 219 ntBASIC15.56■□□□□ 0.08
PKNOX1P55347 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PKNOX1P55347 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PKNOX1P55347 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
PKNOX1P55347 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PKNOX1P55347 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PKNOX1P55347 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PKNOX1P55347 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PKNOX1P55347 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
PKNOX1P55347 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PKNOX1P55347 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PKNOX1P55347 AC105250.1-201ENST00000509378 2057 ntBASIC15.56■□□□□ 0.08
PKNOX1P55347 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.56■□□□□ 0.08
PKNOX1P55347 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.56■□□□□ 0.08
PKNOX1P55347 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PKNOX1P55347 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PKNOX1P55347 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PKNOX1P55347 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PKNOX1P55347 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms