Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.34■□□□□ 0.21
NEK3P51956 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NEK3P51956 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
NEK3P51956 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.34■□□□□ 0.21
NEK3P51956 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
NEK3P51956 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
NEK3P51956 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
NEK3P51956 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.34■□□□□ 0.21
NEK3P51956 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
NEK3P51956 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.34■□□□□ 0.21
NEK3P51956 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
NEK3P51956 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.34■□□□□ 0.21
NEK3P51956 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
NEK3P51956 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.34■□□□□ 0.21
NEK3P51956 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.34■□□□□ 0.21
NEK3P51956 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
NEK3P51956 AC136621.1-201ENST00000624017 2304 ntBASIC16.34■□□□□ 0.21
NEK3P51956 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
NEK3P51956 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
NEK3P51956 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
NEK3P51956 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
NEK3P51956 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.33■□□□□ 0.21
NEK3P51956 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.33■□□□□ 0.21
NEK3P51956 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
NEK3P51956 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.33■□□□□ 0.21
NEK3P51956 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.33■□□□□ 0.21
NEK3P51956 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.33■□□□□ 0.21
NEK3P51956 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.33■□□□□ 0.21
NEK3P51956 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
NEK3P51956 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
NEK3P51956 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
NEK3P51956 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
NEK3P51956 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
NEK3P51956 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
NEK3P51956 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.33■□□□□ 0.2
NEK3P51956 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
NEK3P51956 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
NEK3P51956 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.33■□□□□ 0.2
NEK3P51956 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
NEK3P51956 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.33■□□□□ 0.2
NEK3P51956 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.33■□□□□ 0.2
NEK3P51956 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.33■□□□□ 0.2
NEK3P51956 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.33■□□□□ 0.2
NEK3P51956 AL365330.1-201ENST00000607459 531 ntBASIC16.33■□□□□ 0.2
NEK3P51956 AL590560.3-201ENST00000623350 461 ntBASIC16.33■□□□□ 0.2
NEK3P51956 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
NEK3P51956 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
NEK3P51956 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
NEK3P51956 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
NEK3P51956 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.33■□□□□ 0.2
NEK3P51956 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.33■□□□□ 0.2
NEK3P51956 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC16.33■□□□□ 0.2
NEK3P51956 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
NEK3P51956 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
NEK3P51956 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
NEK3P51956 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.33■□□□□ 0.2
NEK3P51956 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
NEK3P51956 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.33■□□□□ 0.2
NEK3P51956 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
NEK3P51956 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
NEK3P51956 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
NEK3P51956 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.33■□□□□ 0.2
NEK3P51956 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
NEK3P51956 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
NEK3P51956 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.33■□□□□ 0.2
NEK3P51956 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
NEK3P51956 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NEK3P51956 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
NEK3P51956 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
NEK3P51956 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NEK3P51956 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NEK3P51956 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
NEK3P51956 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.32■□□□□ 0.2
NEK3P51956 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NEK3P51956 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
NEK3P51956 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NEK3P51956 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
NEK3P51956 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NEK3P51956 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NEK3P51956 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NEK3P51956 AC004890.2-204ENST00000481968 304 ntBASIC16.32■□□□□ 0.2
NEK3P51956 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NEK3P51956 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NEK3P51956 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.32■□□□□ 0.2
NEK3P51956 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
NEK3P51956 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.32■□□□□ 0.2
NEK3P51956 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NEK3P51956 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NEK3P51956 AL133215.2-201ENST00000609242 977 ntBASIC16.32■□□□□ 0.2
NEK3P51956 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
NEK3P51956 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.32■□□□□ 0.2
NEK3P51956 AC006486.2-201ENST00000624246 2199 ntBASIC16.32■□□□□ 0.2
NEK3P51956 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
NEK3P51956 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NEK3P51956 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.32■□□□□ 0.2
NEK3P51956 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NEK3P51956 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NEK3P51956 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
NEK3P51956 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
NEK3P51956 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms