Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC14.95□□□□□ -0.02
SOX3P41225 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.95□□□□□ -0.02
SOX3P41225 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
SOX3P41225 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.95□□□□□ -0.02
SOX3P41225 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX3P41225 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC14.95□□□□□ -0.02
SOX3P41225 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SOX3P41225 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.94□□□□□ -0.02
SOX3P41225 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
SOX3P41225 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC14.94□□□□□ -0.02
SOX3P41225 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
SOX3P41225 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SOX3P41225 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SOX3P41225 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
SOX3P41225 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
SOX3P41225 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
SOX3P41225 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SOX3P41225 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SOX3P41225 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
SOX3P41225 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.94□□□□□ -0.02
SOX3P41225 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC14.94□□□□□ -0.02
SOX3P41225 RNA5SP421-201ENST00000516864 134 ntBASIC14.94□□□□□ -0.02
SOX3P41225 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC14.94□□□□□ -0.02
SOX3P41225 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
SOX3P41225 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.94□□□□□ -0.02
SOX3P41225 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC14.94□□□□□ -0.02
SOX3P41225 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SOX3P41225 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC14.94□□□□□ -0.02
SOX3P41225 AL096865.1-201ENST00000606796 927 ntBASIC14.94□□□□□ -0.02
SOX3P41225 AL589739.1-201ENST00000607720 493 ntBASIC14.94□□□□□ -0.02
SOX3P41225 AL138828.2-201ENST00000615812 383 ntBASIC14.94□□□□□ -0.02
SOX3P41225 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.94□□□□□ -0.02
SOX3P41225 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SOX3P41225 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SOX3P41225 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SOX3P41225 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SOX3P41225 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SOX3P41225 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
SOX3P41225 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SOX3P41225 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
SOX3P41225 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC14.94□□□□□ -0.02
SOX3P41225 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC14.94□□□□□ -0.02
SOX3P41225 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SOX3P41225 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SOX3P41225 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.94□□□□□ -0.02
SOX3P41225 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC14.94□□□□□ -0.02
SOX3P41225 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SOX3P41225 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
SOX3P41225 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SOX3P41225 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC14.93□□□□□ -0.02
SOX3P41225 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
SOX3P41225 REXO1L8P-201ENST00000604378 1897 ntBASIC14.93□□□□□ -0.02
SOX3P41225 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
SOX3P41225 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SOX3P41225 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SOX3P41225 CETN4P-206ENST00000642099 2168 ntBASIC14.93□□□□□ -0.02
SOX3P41225 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SOX3P41225 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SOX3P41225 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
SOX3P41225 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC14.93□□□□□ -0.02
SOX3P41225 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SOX3P41225 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SOX3P41225 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SOX3P41225 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC14.93□□□□□ -0.02
SOX3P41225 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC14.93□□□□□ -0.02
SOX3P41225 INGX-202ENST00000489074 768 ntBASIC14.93□□□□□ -0.02
SOX3P41225 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC14.93□□□□□ -0.02
SOX3P41225 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC14.93□□□□□ -0.02
SOX3P41225 GPER1-207ENST00000619052 571 ntTSL 2 BASIC14.93□□□□□ -0.02
SOX3P41225 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SOX3P41225 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.93□□□□□ -0.02
SOX3P41225 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SOX3P41225 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC14.93□□□□□ -0.02
SOX3P41225 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SOX3P41225 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SOX3P41225 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC14.93□□□□□ -0.02
SOX3P41225 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SOX3P41225 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SOX3P41225 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SOX3P41225 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SOX3P41225 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.93□□□□□ -0.02
SOX3P41225 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SOX3P41225 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SOX3P41225 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SOX3P41225 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SOX3P41225 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SOX3P41225 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
SOX3P41225 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SOX3P41225 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SOX3P41225 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
SOX3P41225 AL592424.1-201ENST00000563624 1536 ntBASIC14.92□□□□□ -0.02
SOX3P41225 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SOX3P41225 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SOX3P41225 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC14.92□□□□□ -0.02
SOX3P41225 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.92□□□□□ -0.02
SOX3P41225 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms