Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
NPHP4O75161 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP4O75161 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP4O75161 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
NPHP4O75161 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP4O75161 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP4O75161 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP4O75161 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
NPHP4O75161 AL627231.1-201ENST00000394467 1125 ntBASIC21.7■■□□□ 1.06
NPHP4O75161 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP4O75161 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
NPHP4O75161 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC21.7■■□□□ 1.06
NPHP4O75161 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP4O75161 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC21.7■■□□□ 1.06
NPHP4O75161 AC004066.1-201ENST00000502488 802 ntBASIC21.7■■□□□ 1.06
NPHP4O75161 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC21.7■■□□□ 1.06
NPHP4O75161 STUB1-204ENST00000564370 875 ntTSL 2 BASIC21.7■■□□□ 1.06
NPHP4O75161 AL031713.1-201ENST00000564813 661 ntBASIC21.7■■□□□ 1.06
NPHP4O75161 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC21.7■■□□□ 1.06
NPHP4O75161 NAT9-211ENST00000580632 799 ntTSL 3 BASIC21.7■■□□□ 1.06
NPHP4O75161 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC21.7■■□□□ 1.06
NPHP4O75161 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
NPHP4O75161 AC103810.10-201ENST00000606504 343 ntBASIC21.7■■□□□ 1.06
NPHP4O75161 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC21.7■■□□□ 1.06
NPHP4O75161 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
NPHP4O75161 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP4O75161 RNF216P1-203ENST00000404404 2427 ntBASIC21.7■■□□□ 1.06
NPHP4O75161 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP4O75161 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP4O75161 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
NPHP4O75161 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
NPHP4O75161 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC21.7■■□□□ 1.06
NPHP4O75161 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP4O75161 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC21.69■■□□□ 1.06
NPHP4O75161 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
NPHP4O75161 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP4O75161 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP4O75161 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
NPHP4O75161 FLII-221ENST00000578558 2377 ntTSL 5 BASIC21.69■■□□□ 1.06
NPHP4O75161 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC21.69■■□□□ 1.06
NPHP4O75161 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP4O75161 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC21.69■■□□□ 1.06
NPHP4O75161 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC21.69■■□□□ 1.06
NPHP4O75161 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC21.69■■□□□ 1.06
NPHP4O75161 OR2K2-202ENST00000374428 1038 ntBASIC21.69■■□□□ 1.06
NPHP4O75161 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP4O75161 AL157792.1-201ENST00000488281 530 ntBASIC21.69■■□□□ 1.06
NPHP4O75161 AC022616.1-201ENST00000518688 554 ntBASIC21.69■■□□□ 1.06
NPHP4O75161 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC21.69■■□□□ 1.06
NPHP4O75161 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
NPHP4O75161 AC100827.2-201ENST00000563214 1194 ntBASIC21.69■■□□□ 1.06
NPHP4O75161 MIR4313-201ENST00000580760 101 ntBASIC21.69■■□□□ 1.06
NPHP4O75161 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC21.69■■□□□ 1.06
NPHP4O75161 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
NPHP4O75161 AC007718.1-201ENST00000621078 280 ntBASIC21.69■■□□□ 1.06
NPHP4O75161 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP4O75161 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP4O75161 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP4O75161 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
NPHP4O75161 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP4O75161 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP4O75161 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP4O75161 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP4O75161 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
NPHP4O75161 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP4O75161 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC21.68■■□□□ 1.06
NPHP4O75161 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP4O75161 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP4O75161 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP4O75161 IDS-203ENST00000428056 1213 ntTSL 2 BASIC21.68■■□□□ 1.06
NPHP4O75161 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP4O75161 AC079112.1-201ENST00000454972 939 ntBASIC21.68■■□□□ 1.06
NPHP4O75161 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC21.68■■□□□ 1.06
NPHP4O75161 MESTP3-201ENST00000503460 968 ntBASIC21.68■■□□□ 1.06
NPHP4O75161 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC21.68■■□□□ 1.06
NPHP4O75161 AC004466.1-201ENST00000599515 1080 ntBASIC21.68■■□□□ 1.06
NPHP4O75161 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC21.68■■□□□ 1.06
NPHP4O75161 RPL35-206ENST00000629845 340 ntTSL 5 BASIC21.68■■□□□ 1.06
NPHP4O75161 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP4O75161 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP4O75161 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP4O75161 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP4O75161 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP4O75161 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP4O75161 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP4O75161 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC21.67■■□□□ 1.06
NPHP4O75161 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
NPHP4O75161 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP4O75161 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP4O75161 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC21.67■■□□□ 1.06
NPHP4O75161 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP4O75161 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
NPHP4O75161 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP4O75161 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC21.67■■□□□ 1.06
NPHP4O75161 VDAC1P1-201ENST00000439229 848 ntBASIC21.67■■□□□ 1.06
NPHP4O75161 PIN4P1-201ENST00000451079 396 ntBASIC21.67■■□□□ 1.06
NPHP4O75161 RN7SL67P-201ENST00000492147 296 ntBASIC21.67■■□□□ 1.06
NPHP4O75161 HLA-J-204ENST00000495278 958 ntBASIC21.67■■□□□ 1.06
NPHP4O75161 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP4O75161 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms