Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.92■□□□□ 0.3
FOXN3O00409 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXN3O00409 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
FOXN3O00409 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXN3O00409 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.92■□□□□ 0.3
FOXN3O00409 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.92■□□□□ 0.3
FOXN3O00409 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.92■□□□□ 0.3
FOXN3O00409 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FOXN3O00409 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXN3O00409 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FOXN3O00409 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXN3O00409 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
FOXN3O00409 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
FOXN3O00409 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC16.92■□□□□ 0.3
FOXN3O00409 AL080243.2-201ENST00000418783 582 ntBASIC16.92■□□□□ 0.3
FOXN3O00409 TSEN15P1-201ENST00000423257 515 ntBASIC16.92■□□□□ 0.3
FOXN3O00409 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXN3O00409 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.92■□□□□ 0.3
FOXN3O00409 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.92■□□□□ 0.3
FOXN3O00409 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.92■□□□□ 0.3
FOXN3O00409 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.92■□□□□ 0.3
FOXN3O00409 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.92■□□□□ 0.3
FOXN3O00409 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.92■□□□□ 0.3
FOXN3O00409 Z92544.3-201ENST00000624747 417 ntBASIC16.92■□□□□ 0.3
FOXN3O00409 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.92■□□□□ 0.3
FOXN3O00409 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXN3O00409 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXN3O00409 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FOXN3O00409 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC16.92■□□□□ 0.3
FOXN3O00409 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXN3O00409 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.92■□□□□ 0.3
FOXN3O00409 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FOXN3O00409 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXN3O00409 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FOXN3O00409 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FOXN3O00409 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC16.92■□□□□ 0.3
FOXN3O00409 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXN3O00409 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FOXN3O00409 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
FOXN3O00409 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
FOXN3O00409 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXN3O00409 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXN3O00409 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
FOXN3O00409 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
FOXN3O00409 CETN4P-206ENST00000642099 2168 ntBASIC16.91■□□□□ 0.3
FOXN3O00409 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXN3O00409 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.91■□□□□ 0.3
FOXN3O00409 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC16.91■□□□□ 0.3
FOXN3O00409 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXN3O00409 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC16.91■□□□□ 0.3
FOXN3O00409 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
FOXN3O00409 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXN3O00409 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXN3O00409 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC16.91■□□□□ 0.3
FOXN3O00409 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
FOXN3O00409 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.91■□□□□ 0.3
FOXN3O00409 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXN3O00409 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.91■□□□□ 0.3
FOXN3O00409 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXN3O00409 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
FOXN3O00409 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.91■□□□□ 0.3
FOXN3O00409 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.91■□□□□ 0.3
FOXN3O00409 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
FOXN3O00409 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
FOXN3O00409 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
FOXN3O00409 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXN3O00409 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXN3O00409 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXN3O00409 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
FOXN3O00409 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.91■□□□□ 0.3
FOXN3O00409 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC16.91■□□□□ 0.3
FOXN3O00409 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.91■□□□□ 0.3
FOXN3O00409 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
FOXN3O00409 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
FOXN3O00409 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXN3O00409 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXN3O00409 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC16.9■□□□□ 0.3
FOXN3O00409 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC16.9■□□□□ 0.3
FOXN3O00409 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
FOXN3O00409 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.9■□□□□ 0.3
FOXN3O00409 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXN3O00409 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.9■□□□□ 0.3
FOXN3O00409 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC16.9■□□□□ 0.3
FOXN3O00409 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
FOXN3O00409 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
FOXN3O00409 AC091951.1-201ENST00000512854 2465 ntBASIC16.9■□□□□ 0.3
FOXN3O00409 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXN3O00409 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.9■□□□□ 0.3
FOXN3O00409 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
FOXN3O00409 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
FOXN3O00409 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
FOXN3O00409 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.9■□□□□ 0.3
FOXN3O00409 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC16.9■□□□□ 0.3
FOXN3O00409 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.9■□□□□ 0.3
FOXN3O00409 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXN3O00409 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
FOXN3O00409 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.9■□□□□ 0.3
FOXN3O00409 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
FOXN3O00409 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.9■□□□□ 0.3
FOXN3O00409 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms