Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 AC074386.1-202ENST00000463561 864 ntBASIC15.62■□□□□ 0.09
MKS1Q9NXB0 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 AC018845.2-201ENST00000568326 409 ntBASIC15.62■□□□□ 0.09
MKS1Q9NXB0 AC027307.2-201ENST00000591252 911 ntBASIC15.62■□□□□ 0.09
MKS1Q9NXB0 AC104692.2-201ENST00000603054 253 ntBASIC15.62■□□□□ 0.09
MKS1Q9NXB0 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 AL359258.3-201ENST00000622910 2331 ntBASIC15.62■□□□□ 0.09
MKS1Q9NXB0 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
MKS1Q9NXB0 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 FAAHP1-202ENST00000446499 1238 ntBASIC15.61■□□□□ 0.09
MKS1Q9NXB0 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 ACE3P-201ENST00000423435 1973 ntBASIC15.61■□□□□ 0.09
MKS1Q9NXB0 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 AL607033.1-201ENST00000623900 1599 ntBASIC15.61■□□□□ 0.09
MKS1Q9NXB0 AC140479.7-201ENST00000636301 2332 ntBASIC15.61■□□□□ 0.09
MKS1Q9NXB0 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
MKS1Q9NXB0 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 HLA-H-201ENST00000383620 1096 ntBASIC15.6■□□□□ 0.09
MKS1Q9NXB0 PENK-208ENST00000523051 772 ntTSL 5 BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 AC145285.3-201ENST00000564603 959 ntBASIC15.6■□□□□ 0.09
MKS1Q9NXB0 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 AC026979.3-201ENST00000607315 403 ntBASIC15.6■□□□□ 0.09
MKS1Q9NXB0 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 AC084364.1-201ENST00000551967 1556 ntBASIC15.6■□□□□ 0.09
MKS1Q9NXB0 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MKS1Q9NXB0 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms